miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 3' -38 NC_002169.1 + 124055 0.7 1
Target:  5'- --aAAUACACAAUCgucGUcgUCGUCg -3'
miRNA:   3'- aaaUUAUGUGUUAGaaaCGaaAGUAG- -5'
8539 3' -38 NC_002169.1 + 120233 1.07 0.18517
Target:  5'- -gUAAUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 120037 1.07 0.179753
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119796 1.06 0.208298
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119616 1.04 0.254754
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119602 1.04 0.269506
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119518 1.05 0.233877
Target:  5'- uUUUAGUACACGAUCUUUGCUUUUAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119418 1.07 0.179753
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119324 0.87 0.917423
Target:  5'- ---cAUAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauUAUgUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105693 0.95 0.593295
Target:  5'- -gUAAUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGuAG- -5'
8539 3' -38 NC_002169.1 + 105601 1.01 0.372497
Target:  5'- ---cAUACACAAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaauUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105514 0.78 0.999711
Target:  5'- --cGGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aaaUUAUGUGuUAgAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105501 1.01 0.34441
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105407 1.08 0.164339
Target:  5'- cUUUAAUACACGAUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105400 1.09 0.141275
Target:  5'- cUUUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105322 0.91 0.770877
Target:  5'- --aAGUACACAAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUGUUAgAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105287 0.92 0.725237
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAg -5'
8539 3' -38 NC_002169.1 + 105202 1 0.392068
Target:  5'- uUUUAAUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105145 0.9 0.843545
Target:  5'- -----cACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaauuaUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105091 1.11 0.121211
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.