Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8539 | 3' | -38 | NC_002169.1 | + | 124055 | 0.7 | 1 |
Target: 5'- --aAAUACACAAUCgucGUcgUCGUCg -3' miRNA: 3'- aaaUUAUGUGUUAGaaaCGaaAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 120233 | 1.07 | 0.18517 |
Target: 5'- -gUAAUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 120037 | 1.07 | 0.179753 |
Target: 5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 119796 | 1.06 | 0.208298 |
Target: 5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 119616 | 1.04 | 0.254754 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 119602 | 1.04 | 0.269506 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 119518 | 1.05 | 0.233877 |
Target: 5'- uUUUAGUACACGAUCUUUGCUUUUAUCg -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 119418 | 1.07 | 0.179753 |
Target: 5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 119324 | 0.87 | 0.917423 |
Target: 5'- ---cAUAgACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaauUAUgUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105693 | 0.95 | 0.593295 |
Target: 5'- -gUAAUACACGAUCUUUGCUUUC-UCg -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGuAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105601 | 1.01 | 0.372497 |
Target: 5'- ---cAUACACAAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaauUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105514 | 0.78 | 0.999711 |
Target: 5'- --cGGUACAUcAUgUUUGCUUUCAUCc -3' miRNA: 3'- aaaUUAUGUGuUAgAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105501 | 1.01 | 0.34441 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105407 | 1.08 | 0.164339 |
Target: 5'- cUUUAAUACACGAUCUUUGCUUUCAUCc -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105400 | 1.09 | 0.141275 |
Target: 5'- cUUUAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105322 | 0.91 | 0.770877 |
Target: 5'- --aAGUACACAAUgUUUGCUUUCGUCc -3' miRNA: 3'- aaaUUAUGUGUUAgAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105287 | 0.92 | 0.725237 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGUAg -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105202 | 1 | 0.392068 |
Target: 5'- uUUUAAUACACGAUCUUUGCUUUUGUCc -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105145 | 0.9 | 0.843545 |
Target: 5'- -----cACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaauuaUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105091 | 1.11 | 0.121211 |
Target: 5'- uUUUAGUACACGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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