miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 5' -45.8 NC_002169.1 + 42419 0.93 0.215219
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 42350 0.92 0.239323
Target:  5'- cUCGAUGAAAGCAAAGAUCaUGUACUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 10679 0.84 0.534965
Target:  5'- gUCGAUGAAAGCAAAGAUCGUuGUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCA-CAUgau -5'
8539 5' -45.8 NC_002169.1 + 129825 0.73 0.97783
Target:  5'- uUCGAcugaaCGAAcGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -AGCU-----GCUUuCGU--UUCUAGCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 105660 1.01 0.076024
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUGu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11096 0.95 0.163936
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 105376 0.91 0.2522
Target:  5'- gUCGACGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUGCU----------UUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 37283 0.72 0.982521
Target:  5'- aUCGACG-GAGCAGGGAUCGaUG-ACg- -3'
miRNA:   3'- -AGCUGCuUUCGUUUCUAGC-ACaUGau -5'
8539 5' -45.8 NC_002169.1 + 11732 0.94 0.182985
Target:  5'- gUCGAUGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCaCAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 26639 0.72 0.986422
Target:  5'- cUCGGCGAGGGCAAA-AggGUGUACg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUagCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 52825 0.92 0.245692
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 53204 0.93 0.215219
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 104927 0.91 0.265642
Target:  5'- gUCGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105115 0.89 0.341582
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 119482 0.8 0.754068
Target:  5'- -gGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCAcAUGau -5'
8539 5' -45.8 NC_002169.1 + 118888 0.75 0.945011
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUGCUUUCGuu--UCUAGC------------ACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 71797 1.04 0.047547
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11602 1.01 0.06966
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 53284 0.96 0.142642
Target:  5'- gUCGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 52942 0.95 0.163936
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.