Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8540 | 5' | -44.3 | NC_002169.1 | + | 11602 | 1.09 | 0.036191 |
Target: 5'- gUGGACGAAAGCAAAGAUCGUGUAUUAu -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUAAU- -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 105571 | 1.05 | 0.058569 |
Target: 5'- uUGGAUGAAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUAAU- -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 120201 | 1.02 | 0.09137 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 105662 | 1.02 | 0.09137 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 11098 | 1.02 | 0.09137 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 11604 | 1.02 | 0.09137 |
Target: 5'- gUGGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 119582 | 1.02 | 0.09137 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 52944 | 1.02 | 0.09137 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 42030 | 1.02 | 0.09137 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 119633 | 1.02 | 0.09137 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 120073 | 0.98 | 0.141114 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUAAU- -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 11202 | 0.96 | 0.181873 |
Target: 5'- uUGGACGAAAGCAAAGAUCaUGUAUUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGcACAUAAU- -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 105366 | 0.96 | 0.192246 |
Target: 5'- uUGGACaAAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- -ACCUGcUUUCGUUUCUAGCACAUAAU- -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 53074 | 0.95 | 0.197625 |
Target: 5'- uUGGACGAAAGCAAAGAUCaUGUAUUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGcACAUAAU- -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 105534 | 0.94 | 0.232713 |
Target: 5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUAAU- -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 41930 | 0.93 | 0.265833 |
Target: 5'- uUGGACGAAAGCAAAGAUCGaGUAUg- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCaCAUAau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 42289 | 0.93 | 0.272899 |
Target: 5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAuaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 42220 | 0.93 | 0.272899 |
Target: 5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAuaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 119760 | 0.91 | 0.318467 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 11317 | 0.91 | 0.318467 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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