Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8540 | 5' | -44.3 | NC_002169.1 | + | 119356 | 0.75 | 0.973636 |
Target: 5'- -cGAUaAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- acCUGcUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 105443 | 0.9 | 0.387739 |
Target: 5'- -cGACGAAAGCAAAGAUUGUGUAUg- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUAau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 52696 | 0.89 | 0.4259 |
Target: 5'- uUGGACGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGcACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 53154 | 0.89 | 0.4259 |
Target: 5'- uUGGACGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGcACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 71668 | 0.89 | 0.4259 |
Target: 5'- uUGGACGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGcACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 104797 | 0.81 | 0.794479 |
Target: 5'- uUGGACGAAAGCAAAGAUUGacUAUg- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCacAUAau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 52817 | 0.79 | 0.883891 |
Target: 5'- -cGAUGAAAGCAAAGAUgGUGUAc-- -3' miRNA: 3'- acCUGCUUUCGUUUCUAgCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 10743 | 0.79 | 0.891457 |
Target: 5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 11070 | 0.79 | 0.891457 |
Target: 5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 104867 | 0.91 | 0.34331 |
Target: 5'- uUGGACGAAAGCAAAGAUCGaGUAg-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCaCAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 105238 | 0.91 | 0.318467 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 11317 | 0.91 | 0.318467 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 42030 | 1.02 | 0.09137 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 119633 | 1.02 | 0.09137 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 120073 | 0.98 | 0.141114 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUAAU- -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 11202 | 0.96 | 0.181873 |
Target: 5'- uUGGACGAAAGCAAAGAUCaUGUAUUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGcACAUAAU- -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 53074 | 0.95 | 0.197625 |
Target: 5'- uUGGACGAAAGCAAAGAUCaUGUAUUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGcACAUAAU- -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 105534 | 0.94 | 0.232713 |
Target: 5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUAAU- -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 42220 | 0.93 | 0.272899 |
Target: 5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAuaau -5' |
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8540 | 5' | -44.3 | NC_002169.1 | + | 42289 | 0.93 | 0.272899 |
Target: 5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAuaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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