miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8540 5' -44.3 NC_002169.1 + 1188 0.66 0.999996
Target:  5'- cGGGCGAGAGCGGAGuuuuaCGUu----- -3'
miRNA:   3'- aCCUGCUUUCGUUUCua---GCAcauaau -5'
8540 5' -44.3 NC_002169.1 + 10551 0.68 0.999862
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 10677 0.79 0.883891
Target:  5'- -cGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGC-ACAUaau -5'
8540 5' -44.3 NC_002169.1 + 10743 0.79 0.891457
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 10851 0.74 0.979076
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 10870 0.8 0.822735
Target:  5'- uUGGACG-AAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGC-------------ACAUAAU- -5'
8540 5' -44.3 NC_002169.1 + 10971 0.7 0.999224
Target:  5'- -cGACGAAA-CAAAGAUCaUGUAUUAa -3'
miRNA:   3'- acCUGCUUUcGUUUCUAGcACAUAAU- -5'
8540 5' -44.3 NC_002169.1 + 10976 0.77 0.925018
Target:  5'- -cGACGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 11070 0.79 0.891457
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 11098 1.02 0.09137
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 11198 0.9 0.36952
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCaCAUaau -5'
8540 5' -44.3 NC_002169.1 + 11202 0.96 0.181873
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUAAU- -5'
8540 5' -44.3 NC_002169.1 + 11317 0.91 0.318467
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 11330 0.84 0.630871
Target:  5'- -cGACGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACaUAAu -5'
8540 5' -44.3 NC_002169.1 + 11443 0.9 0.36952
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUAAU- -5'
8540 5' -44.3 NC_002169.1 + 11602 1.09 0.036191
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUAAU- -5'
8540 5' -44.3 NC_002169.1 + 11604 1.02 0.09137
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 11730 0.77 0.941144
Target:  5'- -cGAUGAAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGC-------------ACAUAAU- -5'
8540 5' -44.3 NC_002169.1 + 21289 0.66 0.999994
Target:  5'- uUGGACGGGAGacguaGGAGA-CGUGg---- -3'
miRNA:   3'- -ACCUGCUUUCg----UUUCUaGCACauaau -5'
8540 5' -44.3 NC_002169.1 + 26602 0.67 0.999969
Target:  5'- cGGGCGugucGCGGAGcgcuacgauaGUCGUGUAUUu -3'
miRNA:   3'- aCCUGCuuu-CGUUUC----------UAGCACAUAAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.