miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8545 3' -55.3 NC_002169.1 + 1089 0.69 0.806163
Target:  5'- cUCCCGAUGGAguugcccgauuCCAUuaccacGCUGaCGgCGGCCa -3'
miRNA:   3'- -AGGGCUGCUU-----------GGUA------UGAC-GCgGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 6719 0.71 0.711338
Target:  5'- cUCCUGAUGaAACUAcUAUUGcCGCCGACg -3'
miRNA:   3'- -AGGGCUGC-UUGGU-AUGAC-GCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 14328 0.66 0.932714
Target:  5'- -gCCGGCGAauaugucGCCGUugU-CGUCGACa -3'
miRNA:   3'- agGGCUGCU-------UGGUAugAcGCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 22316 1.13 0.001856
Target:  5'- gUCCCGACGAACCAUACUGCGCCGACCg -3'
miRNA:   3'- -AGGGCUGCUUGGUAUGACGCGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 22520 0.69 0.814926
Target:  5'- uUUCCGGCcGGCaCGUGCUG-GCCGAgCa -3'
miRNA:   3'- -AGGGCUGcUUG-GUAUGACgCGGCUgG- -5'
8545 3' -55.3 NC_002169.1 + 26010 0.67 0.871193
Target:  5'- gCCCGAuuugucgcCGAaggcacuuaGCCGgucgGCgGCGCCGGCUg -3'
miRNA:   3'- aGGGCU--------GCU---------UGGUa---UGaCGCGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 26102 0.69 0.814926
Target:  5'- -aCgGcACGGACgAUGCgUGCGCCGGCg -3'
miRNA:   3'- agGgC-UGCUUGgUAUG-ACGCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 26209 0.71 0.701334
Target:  5'- gUCgCCGGCGAagGCUuuuacaAUUGCGCCGACg -3'
miRNA:   3'- -AG-GGCUGCU--UGGua----UGACGCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 30830 0.66 0.927546
Target:  5'- gCCCGucaagucACGGGCCGU-CUGCGUuucuacguCGAUCg -3'
miRNA:   3'- aGGGC-------UGCUUGGUAuGACGCG--------GCUGG- -5'
8545 3' -55.3 NC_002169.1 + 32433 0.69 0.82267
Target:  5'- -gCCGGCGAcGCCGUguaccgaGCUGuCGCCGaACUg -3'
miRNA:   3'- agGGCUGCU-UGGUA-------UGAC-GCGGC-UGG- -5'
8545 3' -55.3 NC_002169.1 + 36050 0.78 0.343045
Target:  5'- aUCCCGACGAcaaaacguCCAUG-UGCGCCG-CCg -3'
miRNA:   3'- -AGGGCUGCUu-------GGUAUgACGCGGCuGG- -5'
8545 3' -55.3 NC_002169.1 + 36702 0.75 0.499926
Target:  5'- gCCCGGCGAAUCGUACUGCa-UGGCg -3'
miRNA:   3'- aGGGCUGCUUGGUAUGACGcgGCUGg -5'
8545 3' -55.3 NC_002169.1 + 37428 0.66 0.91121
Target:  5'- gUUCCGACGAagGCCucACcauCGUCGGCCg -3'
miRNA:   3'- -AGGGCUGCU--UGGuaUGac-GCGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 37581 0.71 0.701334
Target:  5'- aUCUCGACGAACUGacucUAUUGCGaUCGACa -3'
miRNA:   3'- -AGGGCUGCUUGGU----AUGACGC-GGCUGg -5'
8545 3' -55.3 NC_002169.1 + 40772 0.67 0.878424
Target:  5'- -gCCGACGAAgguaUAUACUGCGaCGAUg -3'
miRNA:   3'- agGGCUGCUUg---GUAUGACGCgGCUGg -5'
8545 3' -55.3 NC_002169.1 + 42777 0.71 0.691272
Target:  5'- aUCCUGcCGcaAGCCGUGCUaGCGCuCGACa -3'
miRNA:   3'- -AGGGCuGC--UUGGUAUGA-CGCG-GCUGg -5'
8545 3' -55.3 NC_002169.1 + 45820 0.71 0.691272
Target:  5'- -aCCGGCGAuuucACCAgauUGCU-CGCCGACUc -3'
miRNA:   3'- agGGCUGCU----UGGU---AUGAcGCGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 47020 0.67 0.905115
Target:  5'- gUCCGAgUGAaugACCAgACUGCGuCCGAUg -3'
miRNA:   3'- aGGGCU-GCU---UGGUaUGACGC-GGCUGg -5'
8545 3' -55.3 NC_002169.1 + 47185 0.71 0.67101
Target:  5'- gCCCaACGGAUUAUAgUGUucGCCGGCCg -3'
miRNA:   3'- aGGGcUGCUUGGUAUgACG--CGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 48207 0.72 0.619947
Target:  5'- aCCCGACGAcgauCUcgACUGCGauCCGGCa -3'
miRNA:   3'- aGGGCUGCUu---GGuaUGACGC--GGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.