miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8545 3' -55.3 NC_002169.1 + 129846 0.76 0.443743
Target:  5'- uUCCCGGgGAAcCCAUACUGUuUCGACUg -3'
miRNA:   3'- -AGGGCUgCUU-GGUAUGACGcGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 128799 0.68 0.835263
Target:  5'- -gCCGuCGAGCCAUGCgugacgcuguaugcGCGCCaucgaGGCCa -3'
miRNA:   3'- agGGCuGCUUGGUAUGa-------------CGCGG-----CUGG- -5'
8545 3' -55.3 NC_002169.1 + 123389 0.66 0.933218
Target:  5'- aCCCG-CGGGCCGcaUGCcgGCGacagggaacaCGACCa -3'
miRNA:   3'- aGGGCuGCUUGGU--AUGa-CGCg---------GCUGG- -5'
8545 3' -55.3 NC_002169.1 + 110339 0.69 0.797244
Target:  5'- aCuuGACGuacACCGUAUUGuUGCUGACUg -3'
miRNA:   3'- aGggCUGCu--UGGUAUGAC-GCGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 100118 0.67 0.905115
Target:  5'- gUCUGACGGccuuuucaauACCAcgacCUGCGCCG-CCu -3'
miRNA:   3'- aGGGCUGCU----------UGGUau--GACGCGGCuGG- -5'
8545 3' -55.3 NC_002169.1 + 96913 0.66 0.938124
Target:  5'- -gUCGuCGAcACCGUcgGCaGCGUCGACCg -3'
miRNA:   3'- agGGCuGCU-UGGUA--UGaCGCGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 85937 0.66 0.938124
Target:  5'- -aUCGugGAuGCCuUGC-GCGCCGGCg -3'
miRNA:   3'- agGGCugCU-UGGuAUGaCGCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 84026 0.66 0.917069
Target:  5'- aCCCGuCGAgacauaaacuGCCAUGC-GUGCCucCCg -3'
miRNA:   3'- aGGGCuGCU----------UGGUAUGaCGCGGcuGG- -5'
8545 3' -55.3 NC_002169.1 + 82773 0.66 0.938124
Target:  5'- gCCCGAuCGuAUC-UAUUGaCGCCGACa -3'
miRNA:   3'- aGGGCU-GCuUGGuAUGAC-GCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 78032 0.69 0.796344
Target:  5'- gCCCGACGAacgcuucgacgcgACCucgaAUACgugcGUGCCGAUCc -3'
miRNA:   3'- aGGGCUGCU-------------UGG----UAUGa---CGCGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 76510 0.68 0.840185
Target:  5'- cCCCGACGAuCCGcuuUGCaaUGCuCCGACg -3'
miRNA:   3'- aGGGCUGCUuGGU---AUG--ACGcGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 73632 0.72 0.6404
Target:  5'- --aCGAUGAG-CGUGCUcGCGCUGACCg -3'
miRNA:   3'- aggGCUGCUUgGUAUGA-CGCGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 69963 0.67 0.885437
Target:  5'- aCUCGACG-ACCAcAUcgGUGCcCGACCu -3'
miRNA:   3'- aGGGCUGCuUGGUaUGa-CGCG-GCUGG- -5'
8545 3' -55.3 NC_002169.1 + 63167 0.68 0.831944
Target:  5'- cUUCGACGAguGCUucUACUGCGacgaCGGCCg -3'
miRNA:   3'- aGGGCUGCU--UGGu-AUGACGCg---GCUGG- -5'
8545 3' -55.3 NC_002169.1 + 62072 0.68 0.840185
Target:  5'- uUCUCGAucugugccgucCGAGCCAU-UUGCG-CGACCg -3'
miRNA:   3'- -AGGGCU-----------GCUUGGUAuGACGCgGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 61848 0.78 0.35078
Target:  5'- aUCCCGACGGACaCAUuaauCUGuCGCUGGCg -3'
miRNA:   3'- -AGGGCUGCUUG-GUAu---GAC-GCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 58881 0.66 0.938124
Target:  5'- gCCgCGACGAACCAcaaUACUuuGgUGACUa -3'
miRNA:   3'- aGG-GCUGCUUGGU---AUGAcgCgGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 58881 0.66 0.928074
Target:  5'- uUCUCGAUcAACUAcUAUcgGCGCCGACg -3'
miRNA:   3'- -AGGGCUGcUUGGU-AUGa-CGCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 55975 0.69 0.788176
Target:  5'- -aCCGGCGuuauGCCGUGC-GUGUCGGCa -3'
miRNA:   3'- agGGCUGCu---UGGUAUGaCGCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 48207 0.72 0.619947
Target:  5'- aCCCGACGAcgauCUcgACUGCGauCCGGCa -3'
miRNA:   3'- aGGGCUGCUu---GGuaUGACGC--GGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.