Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8545 | 3' | -55.3 | NC_002169.1 | + | 22316 | 1.13 | 0.001856 |
Target: 5'- gUCCCGACGAACCAUACUGCGCCGACCg -3' miRNA: 3'- -AGGGCUGCUUGGUAUGACGCGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 96913 | 0.66 | 0.938124 |
Target: 5'- -gUCGuCGAcACCGUcgGCaGCGUCGACCg -3' miRNA: 3'- agGGCuGCU-UGGUA--UGaCGCGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 58881 | 0.66 | 0.938124 |
Target: 5'- gCCgCGACGAACCAcaaUACUuuGgUGACUa -3' miRNA: 3'- aGG-GCUGCUUGGU---AUGAcgCgGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 84026 | 0.66 | 0.917069 |
Target: 5'- aCCCGuCGAgacauaaacuGCCAUGC-GUGCCucCCg -3' miRNA: 3'- aGGGCuGCU----------UGGUAUGaCGCGGcuGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 47020 | 0.67 | 0.905115 |
Target: 5'- gUCCGAgUGAaugACCAgACUGCGuCCGAUg -3' miRNA: 3'- aGGGCU-GCU---UGGUaUGACGC-GGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 26102 | 0.69 | 0.814926 |
Target: 5'- -aCgGcACGGACgAUGCgUGCGCCGGCg -3' miRNA: 3'- agGgC-UGCUUGgUAUG-ACGCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 55975 | 0.69 | 0.788176 |
Target: 5'- -aCCGGCGuuauGCCGUGC-GUGUCGGCa -3' miRNA: 3'- agGGCUGCu---UGGUAUGaCGCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 6719 | 0.71 | 0.711338 |
Target: 5'- cUCCUGAUGaAACUAcUAUUGcCGCCGACg -3' miRNA: 3'- -AGGGCUGC-UUGGU-AUGAC-GCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 26209 | 0.71 | 0.701334 |
Target: 5'- gUCgCCGGCGAagGCUuuuacaAUUGCGCCGACg -3' miRNA: 3'- -AG-GGCUGCU--UGGua----UGACGCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 42777 | 0.71 | 0.691272 |
Target: 5'- aUCCUGcCGcaAGCCGUGCUaGCGCuCGACa -3' miRNA: 3'- -AGGGCuGC--UUGGUAUGA-CGCG-GCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 36050 | 0.78 | 0.343045 |
Target: 5'- aUCCCGACGAcaaaacguCCAUG-UGCGCCG-CCg -3' miRNA: 3'- -AGGGCUGCUu-------GGUAUgACGCGGCuGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 61848 | 0.78 | 0.35078 |
Target: 5'- aUCCCGACGGACaCAUuaauCUGuCGCUGGCg -3' miRNA: 3'- -AGGGCUGCUUG-GUAu---GAC-GCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 36702 | 0.75 | 0.499926 |
Target: 5'- gCCCGGCGAAUCGUACUGCa-UGGCg -3' miRNA: 3'- aGGGCUGCUUGGUAUGACGcgGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 48207 | 0.72 | 0.619947 |
Target: 5'- aCCCGACGAcgauCUcgACUGCGauCCGGCa -3' miRNA: 3'- aGGGCUGCUu---GGuaUGACGC--GGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 73632 | 0.72 | 0.6404 |
Target: 5'- --aCGAUGAG-CGUGCUcGCGCUGACCg -3' miRNA: 3'- aggGCUGCUUgGUAUGA-CGCGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 47185 | 0.71 | 0.67101 |
Target: 5'- gCCCaACGGAUUAUAgUGUucGCCGGCCg -3' miRNA: 3'- aGGGcUGCUUGGUAUgACG--CGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 129846 | 0.76 | 0.443743 |
Target: 5'- uUCCCGGgGAAcCCAUACUGUuUCGACUg -3' miRNA: 3'- -AGGGCUgCUU-GGUAUGACGcGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 82773 | 0.66 | 0.938124 |
Target: 5'- gCCCGAuCGuAUC-UAUUGaCGCCGACa -3' miRNA: 3'- aGGGCU-GCuUGGuAUGAC-GCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 123389 | 0.66 | 0.933218 |
Target: 5'- aCCCG-CGGGCCGcaUGCcgGCGacagggaacaCGACCa -3' miRNA: 3'- aGGGCuGCUUGGU--AUGa-CGCg---------GCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 14328 | 0.66 | 0.932714 |
Target: 5'- -gCCGGCGAauaugucGCCGUugU-CGUCGACa -3' miRNA: 3'- agGGCUGCU-------UGGUAugAcGCGGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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