Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8545 | 3' | -55.3 | NC_002169.1 | + | 30830 | 0.66 | 0.927546 |
Target: 5'- gCCCGucaagucACGGGCCGU-CUGCGUuucuacguCGAUCg -3' miRNA: 3'- aGGGC-------UGCUUGGUAuGACGCG--------GCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 1089 | 0.69 | 0.806163 |
Target: 5'- cUCCCGAUGGAguugcccgauuCCAUuaccacGCUGaCGgCGGCCa -3' miRNA: 3'- -AGGGCUGCUU-----------GGUA------UGAC-GCgGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 78032 | 0.69 | 0.796344 |
Target: 5'- gCCCGACGAacgcuucgacgcgACCucgaAUACgugcGUGCCGAUCc -3' miRNA: 3'- aGGGCUGCU-------------UGG----UAUGa---CGCGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 129846 | 0.76 | 0.443743 |
Target: 5'- uUCCCGGgGAAcCCAUACUGUuUCGACUg -3' miRNA: 3'- -AGGGCUgCUU-GGUAUGACGcGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 40772 | 0.67 | 0.878424 |
Target: 5'- -gCCGACGAAgguaUAUACUGCGaCGAUg -3' miRNA: 3'- agGGCUGCUUg---GUAUGACGCgGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 85937 | 0.66 | 0.938124 |
Target: 5'- -aUCGugGAuGCCuUGC-GCGCCGGCg -3' miRNA: 3'- agGGCugCU-UGGuAUGaCGCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 82773 | 0.66 | 0.938124 |
Target: 5'- gCCCGAuCGuAUC-UAUUGaCGCCGACa -3' miRNA: 3'- aGGGCU-GCuUGGuAUGAC-GCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 123389 | 0.66 | 0.933218 |
Target: 5'- aCCCG-CGGGCCGcaUGCcgGCGacagggaacaCGACCa -3' miRNA: 3'- aGGGCuGCUUGGU--AUGa-CGCg---------GCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 14328 | 0.66 | 0.932714 |
Target: 5'- -gCCGGCGAauaugucGCCGUugU-CGUCGACa -3' miRNA: 3'- agGGCUGCU-------UGGUAugAcGCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 22520 | 0.69 | 0.814926 |
Target: 5'- uUUCCGGCcGGCaCGUGCUG-GCCGAgCa -3' miRNA: 3'- -AGGGCUGcUUG-GUAUGACgCGGCUgG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 128799 | 0.68 | 0.835263 |
Target: 5'- -gCCGuCGAGCCAUGCgugacgcuguaugcGCGCCaucgaGGCCa -3' miRNA: 3'- agGGCuGCUUGGUAUGa-------------CGCGG-----CUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 62072 | 0.68 | 0.840185 |
Target: 5'- uUCUCGAucugugccgucCGAGCCAU-UUGCG-CGACCg -3' miRNA: 3'- -AGGGCU-----------GCUUGGUAuGACGCgGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 37428 | 0.66 | 0.91121 |
Target: 5'- gUUCCGACGAagGCCucACcauCGUCGGCCg -3' miRNA: 3'- -AGGGCUGCU--UGGuaUGac-GCGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 63167 | 0.68 | 0.831944 |
Target: 5'- cUUCGACGAguGCUucUACUGCGacgaCGGCCg -3' miRNA: 3'- aGGGCUGCU--UGGu-AUGACGCg---GCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 100118 | 0.67 | 0.905115 |
Target: 5'- gUCUGACGGccuuuucaauACCAcgacCUGCGCCG-CCu -3' miRNA: 3'- aGGGCUGCU----------UGGUau--GACGCGGCuGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 76510 | 0.68 | 0.840185 |
Target: 5'- cCCCGACGAuCCGcuuUGCaaUGCuCCGACg -3' miRNA: 3'- aGGGCUGCUuGGU---AUG--ACGcGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 32433 | 0.69 | 0.82267 |
Target: 5'- -gCCGGCGAcGCCGUguaccgaGCUGuCGCCGaACUg -3' miRNA: 3'- agGGCUGCU-UGGUA-------UGAC-GCGGC-UGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 110339 | 0.69 | 0.797244 |
Target: 5'- aCuuGACGuacACCGUAUUGuUGCUGACUg -3' miRNA: 3'- aGggCUGCu--UGGUAUGAC-GCGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 69963 | 0.67 | 0.885437 |
Target: 5'- aCUCGACG-ACCAcAUcgGUGCcCGACCu -3' miRNA: 3'- aGGGCUGCuUGGUaUGa-CGCG-GCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 26010 | 0.67 | 0.871193 |
Target: 5'- gCCCGAuuugucgcCGAaggcacuuaGCCGgucgGCgGCGCCGGCUg -3' miRNA: 3'- aGGGCU--------GCU---------UGGUa---UGaCGCGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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