miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8551 3' -42.1 NC_002169.1 + 41868 1.11 0.043353
Target:  5'- aUUUCAUACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAGUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 71633 1.02 0.137196
Target:  5'- aUUUCAgUACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAGU-AUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 119598 1 0.158756
Target:  5'- uUUUCAgUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAGU-AUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 41996 1 0.168207
Target:  5'- gUUCAgUACACGAUCUUUGCUUUCAUCu -3'
miRNA:   3'- aAAGU-AUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 119796 0.98 0.211202
Target:  5'- cUUUgGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAgUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 119320 0.98 0.211202
Target:  5'- uUUUCAUAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAGUAUgUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10935 0.98 0.211202
Target:  5'- cUUUgGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAgUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 105095 0.98 0.211202
Target:  5'- ---aGUACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11475 0.97 0.236062
Target:  5'- ---aGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 105396 0.97 0.236062
Target:  5'- ---aGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 104763 0.96 0.256281
Target:  5'- aUUUCaAUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- -AAAG-UAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 120231 0.96 0.256281
Target:  5'- ---aAUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11172 0.96 0.256281
Target:  5'- ---aAUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 53120 0.96 0.263329
Target:  5'- aUUCAgUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aAAGU-AUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 105605 0.95 0.285418
Target:  5'- uUUUCAUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAGUAUGUGcUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 53039 0.95 0.293099
Target:  5'- aUUCuaGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aAAG--UAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 52785 0.95 0.293099
Target:  5'- ---gGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 105411 0.95 0.293099
Target:  5'- ---aAUACACGAUCUUUGCUUUCAUCc -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 105502 0.95 0.300941
Target:  5'- ---aGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 120041 0.95 0.300941
Target:  5'- ---aGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.