Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8551 | 3' | -42.1 | NC_002169.1 | + | 104953 | 0.94 | 0.351375 |
Target: 5'- cUUCAgUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aAAGU-AUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 53039 | 0.95 | 0.293099 |
Target: 5'- aUUCuaGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aAAG--UAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 11444 | 0.95 | 0.300941 |
Target: 5'- ---aGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 105502 | 0.95 | 0.300941 |
Target: 5'- ---aGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 119422 | 0.95 | 0.300941 |
Target: 5'- ---aGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 120041 | 0.95 | 0.300941 |
Target: 5'- ---aGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 42190 | 0.94 | 0.342567 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 42259 | 0.94 | 0.342567 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 104837 | 0.94 | 0.342567 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 52785 | 0.95 | 0.293099 |
Target: 5'- ---gGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 105411 | 0.95 | 0.293099 |
Target: 5'- ---aAUACACGAUCUUUGCUUUCAUCc -3' miRNA: 3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 53120 | 0.96 | 0.263329 |
Target: 5'- aUUCAgUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aAAGU-AUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 71633 | 1.02 | 0.137196 |
Target: 5'- aUUUCAgUACACGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAGU-AUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 119598 | 1 | 0.158756 |
Target: 5'- uUUUCAgUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAGU-AUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 41996 | 1 | 0.168207 |
Target: 5'- gUUCAgUACACGAUCUUUGCUUUCAUCu -3' miRNA: 3'- aAAGU-AUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 105095 | 0.98 | 0.211202 |
Target: 5'- ---aGUACACGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 10935 | 0.98 | 0.211202 |
Target: 5'- cUUUgGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAgUAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 119320 | 0.98 | 0.211202 |
Target: 5'- uUUUCAUAgACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAGUAUgUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 11172 | 0.96 | 0.256281 |
Target: 5'- ---aAUGCACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5' |
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8551 | 3' | -42.1 | NC_002169.1 | + | 104763 | 0.96 | 0.256281 |
Target: 5'- aUUUCaAUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- -AAAG-UAUGUGCUAGAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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