miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8551 3' -42.1 NC_002169.1 + 5638 0.66 1
Target:  5'- ---uGUACGCGAUCgugauuguaugugGCUUUCAUg -3'
miRNA:   3'- aaagUAUGUGCUAGaaa----------CGAAAGUAg -5'
8551 3' -42.1 NC_002169.1 + 5866 0.66 1
Target:  5'- --cCAUACaACGAUCUUgGCgUUCAgUCa -3'
miRNA:   3'- aaaGUAUG-UGCUAGAAaCGaAAGU-AG- -5'
8551 3' -42.1 NC_002169.1 + 10324 0.71 0.999731
Target:  5'- -aUCGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaAGUAUGUGCU--------AGAAACGaaAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10520 0.83 0.843817
Target:  5'- -----cACaACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaguaUG-UGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10709 0.73 0.998621
Target:  5'- ---aGUACACaAUgUUUGCUUUCAUCu -3'
miRNA:   3'- aaagUAUGUGcUAgAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10711 0.84 0.79504
Target:  5'- ---aGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagUAUGuGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10819 0.87 0.626877
Target:  5'- ---aGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAgAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10900 0.93 0.378752
Target:  5'- ---aGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10935 0.98 0.211202
Target:  5'- cUUUgGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAgUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11008 0.94 0.342567
Target:  5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11038 0.84 0.79504
Target:  5'- ---aGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagUAUGuGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11128 0.92 0.407524
Target:  5'- ---aAUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11172 0.96 0.256281
Target:  5'- ---aAUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11228 0.93 0.378752
Target:  5'- ---aGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11285 0.83 0.815208
Target:  5'- ---aAUACACaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagUAUGUGcUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11362 0.9 0.501411
Target:  5'- ---aAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11444 0.95 0.300941
Target:  5'- ---aGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11475 0.97 0.236062
Target:  5'- ---aGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11572 0.87 0.650158
Target:  5'- ---aGUACuCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagUAUGuGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11639 0.85 0.719153
Target:  5'- aUUCuaGUACAUGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- aAAG--UAUGUGCUAgAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.