miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8552 3' -44.4 NC_002169.1 + 104956 0.66 0.999991
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAuGUgcUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 59828 0.67 0.999951
Target:  5'- gUUCAuGU-CGCGAUCgaugUUGCcguUUUCGUCg -3'
miRNA:   3'- -AAGU-CAuGUGCUAGa---AACG---AAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 5642 0.7 0.998408
Target:  5'- uUUguGUACGCGAUCgugauuguaugugGCUUUCAUg -3'
miRNA:   3'- -AAguCAUGUGCUAGaaa----------CGAAAGUAg -5'
8552 3' -44.4 NC_002169.1 + 53095 0.7 0.998376
Target:  5'- uUUCA-UACuCaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUcAUGuGcUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 42378 0.71 0.997608
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aagucaUGUGcUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 42453 0.73 0.986266
Target:  5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aagUCA---UGUGcUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105322 0.74 0.977328
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aagUCAUGUGcUAgAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 41768 0.77 0.920179
Target:  5'- cUCcaUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAGucAUGuGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105690 0.78 0.877284
Target:  5'- ----aUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aagucAUGUGCUAGAAACGAAAGuAG- -5'
8552 3' -44.4 NC_002169.1 + 11281 0.78 0.877284
Target:  5'- aUUUAaUACACaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUcAUGUGcUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 10520 0.78 0.877284
Target:  5'- -----cACaACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aagucaUG-UGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105604 0.8 0.815054
Target:  5'- uUUCA-UACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUcAUGUGcUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105516 0.8 0.795252
Target:  5'- gUCGGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aAGUCAUGUGcUAgAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 10713 0.81 0.753542
Target:  5'- uUUUAGUACACaAUgUUUGCUUUCAUCu -3'
miRNA:   3'- -AAGUCAUGUGcUAgAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105202 0.82 0.709697
Target:  5'- uUUUAaUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 119321 0.82 0.698498
Target:  5'- uUUCA-UAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUcAUgUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105150 0.83 0.653131
Target:  5'- uUUCGc-ACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUcaUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 11366 0.84 0.596029
Target:  5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105032 0.85 0.562078
Target:  5'- aUCAGccUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAGUC--AUGuGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 52898 0.86 0.496029
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AAGUCAUGUGcUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.