miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8553 3' -45.1 NC_002169.1 + 42216 1.06 0.038136
Target:  5'- gAUCUUGGACGAAAGCAAAGAUUGUGUu -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAACACA- -5'
8553 3' -45.1 NC_002169.1 + 42285 1.06 0.038136
Target:  5'- gAUCUUGGACGAAAGCAAAGAUUGUGUu -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAACACA- -5'
8553 3' -45.1 NC_002169.1 + 105666 0.98 0.108119
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 11102 0.98 0.108119
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 52948 0.98 0.108119
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 120205 0.98 0.108119
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 119629 0.98 0.108119
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 119586 0.98 0.108119
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 42026 0.98 0.11131
Target:  5'- aAUCUUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 104793 0.95 0.166167
Target:  5'- gAUCUUGGACGAAAGCAAAGAUUGa-- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAACaca -5'
8553 3' -45.1 NC_002169.1 + 105575 0.94 0.180726
Target:  5'- gAUCUUGGAUGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 105487 0.94 0.196404
Target:  5'- gAUCUUGGACGAAAGCAAAcAUUGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUcUAACACA- -5'
8553 3' -45.1 NC_002169.1 + 105437 0.93 0.213257
Target:  5'- gAUCUUcGACGAAAGCAAAGAUUGUGUa -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUAACACA- -5'
8553 3' -45.1 NC_002169.1 + 71664 0.9 0.293382
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 11198 0.9 0.293382
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 52692 0.9 0.293382
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 53070 0.9 0.293382
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 53150 0.9 0.293382
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 105121 0.9 0.293382
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 11608 0.89 0.33313
Target:  5'- gAUCgUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGaACCUGCUUUCGUUUCUAaCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.