miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8553 3' -45.1 NC_002169.1 + 10545 0.69 0.998775
Target:  5'- gAUCguaGAUGAAAGCAAAcAUUGUGUa -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUcUAACACA- -5'
8553 3' -45.1 NC_002169.1 + 10683 0.71 0.992742
Target:  5'- gAUCgucGAUGAAAGCAAAGAUcguUGUGg -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUA---ACACa -5'
8553 3' -45.1 NC_002169.1 + 10737 0.76 0.924042
Target:  5'- gAUCUUcGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 10845 0.66 0.999976
Target:  5'- gAUCgucGAUGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 10874 0.77 0.904612
Target:  5'- gAUCUUGGACGAA-GCAAAGAUcGaGUa -3'
miRNA:   3'- -UAGAACCUGCUUuCGUUUCUAaCaCA- -5'
8553 3' -45.1 NC_002169.1 + 11064 0.76 0.924042
Target:  5'- gAUCUUcGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 11102 0.98 0.108119
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 11198 0.9 0.293382
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 11202 0.87 0.423924
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcGaGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCaCA- -5'
8553 3' -45.1 NC_002169.1 + 11311 0.84 0.572286
Target:  5'- gAUCUUcGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 11336 0.73 0.976052
Target:  5'- gAUCgucGACGAAAGCAAAGAUcGUGc -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUAaCACa -5'
8553 3' -45.1 NC_002169.1 + 11449 0.83 0.628755
Target:  5'- gAUCgucGAUGAAAGCAAAGAUUGUGUa -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUAACACA- -5'
8553 3' -45.1 NC_002169.1 + 11598 0.89 0.33313
Target:  5'- gAUCgUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGaACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 11608 0.89 0.33313
Target:  5'- gAUCgUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGaACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 29546 0.66 0.999976
Target:  5'- uUCgUGGACGAGAaCGAGGAcgaGUGUa -3'
miRNA:   3'- uAGaACCUGCUUUcGUUUCUaa-CACA- -5'
8553 3' -45.1 NC_002169.1 + 41898 0.74 0.959181
Target:  5'- gAUCUUGGACGAAAGCAAAa------- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUcuaacaca -5'
8553 3' -45.1 NC_002169.1 + 41934 0.87 0.423924
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcGaGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCaCA- -5'
8553 3' -45.1 NC_002169.1 + 42026 0.98 0.11131
Target:  5'- aAUCUUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 42035 0.71 0.992742
Target:  5'- gAUCcucGAUGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 42158 0.69 0.998499
Target:  5'- -----aGAUGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- uagaacCUGCUUUCGUUUCUAaCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.