miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8553 3' -45.1 NC_002169.1 + 41898 0.74 0.959181
Target:  5'- gAUCUUGGACGAAAGCAAAa------- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUcuaacaca -5'
8553 3' -45.1 NC_002169.1 + 104863 0.87 0.423924
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcGaGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCaCA- -5'
8553 3' -45.1 NC_002169.1 + 11311 0.84 0.572286
Target:  5'- gAUCUUcGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 120067 0.84 0.572286
Target:  5'- gAUCUUcGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 105528 0.8 0.772265
Target:  5'- gAUCUUcGAUGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 105232 0.78 0.866551
Target:  5'- gAUCgucGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 104983 0.76 0.91138
Target:  5'- gAUCUUcGAUGAAAGCAAAGAUcaUGUGc -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUA--ACACa -5'
8553 3' -45.1 NC_002169.1 + 10737 0.76 0.924042
Target:  5'- gAUCUUcGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 11064 0.76 0.924042
Target:  5'- gAUCUUcGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 11598 0.89 0.33313
Target:  5'- gAUCgUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGaACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 71664 0.9 0.293382
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 53150 0.9 0.293382
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 42285 1.06 0.038136
Target:  5'- gAUCUUGGACGAAAGCAAAGAUUGUGUu -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAACACA- -5'
8553 3' -45.1 NC_002169.1 + 119629 0.98 0.108119
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 42026 0.98 0.11131
Target:  5'- aAUCUUGGACGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 104793 0.95 0.166167
Target:  5'- gAUCUUGGACGAAAGCAAAGAUUGa-- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUAACaca -5'
8553 3' -45.1 NC_002169.1 + 105437 0.93 0.213257
Target:  5'- gAUCUUcGACGAAAGCAAAGAUUGUGUa -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUAACACA- -5'
8553 3' -45.1 NC_002169.1 + 11198 0.9 0.293382
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 52692 0.9 0.293382
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 53070 0.9 0.293382
Target:  5'- gAUCUUGGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUCUA--ACAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.