miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8553 5' -43.5 NC_002169.1 + 42259 1.12 0.030937
Target:  5'- aGUACAUGAUCUUUGCUUUCAUCGACGa -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 53044 1.12 0.030937
Target:  5'- aGUACAUGAUCUUUGCUUUCAUCGACGa -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11008 1.12 0.030937
Target:  5'- aGUACAUGAUCUUUGCUUUCAUCGACGa -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 53124 1.11 0.034914
Target:  5'- aGUACAUGAUCUUUGCUUUCGUCGACGa -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 42190 1.04 0.09067
Target:  5'- aGUACAUGAUCUUUGCUUUCAUCGAgGa -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUgC- -5'
8553 5' -43.5 NC_002169.1 + 11634 1.02 0.104918
Target:  5'- aGUACAUGAUgUUUGCUUUCAUCGACGa -3'
miRNA:   3'- -CAUGUACUAgAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 105396 1.01 0.124791
Target:  5'- aGUACAcGAUCUUUGCUUUCGUCGACGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 119612 1.01 0.124791
Target:  5'- aGUACAUGAUCUUUGCUUUCAUCGAa- -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 104837 1.01 0.124791
Target:  5'- aGUACAUGAUCUUUGCUUUCAUCGAa- -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 10900 1 0.139923
Target:  5'- aGUACAUGAUCUUUGCUUUCGUCGAa- -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 11228 1 0.139923
Target:  5'- aGUACAUGAUCUUUGCUUUCGUCGAa- -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 53314 0.98 0.190538
Target:  5'- aGUACAUGAUCUUUGCUUucguccaagaUCGUCGACGa -3'
miRNA:   3'- -CAUGUACUAGAAACGAA----------AGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11173 0.97 0.195863
Target:  5'- aUGCAcGAUCUUUGCUUUCGUCGACGa -3'
miRNA:   3'- cAUGUaCUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11127 0.97 0.218476
Target:  5'- aUACAUGAUCUUUGCUUUCGUCGAa- -3'
miRNA:   3'- cAUGUACUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 11572 0.95 0.256542
Target:  5'- aGUACucGAUCUUUGCUUUCAUCGACGa -3'
miRNA:   3'- -CAUGuaCUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 105145 0.95 0.263391
Target:  5'- -cACAUGAUCUUUGCUUUCAUCGAa- -3'
miRNA:   3'- caUGUACUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 11361 0.94 0.292275
Target:  5'- aUACAUGAUCUUUGCUUucguccaagaUCGUCGACGa -3'
miRNA:   3'- cAUGUACUAGAAACGAA----------AGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 71638 0.94 0.299872
Target:  5'- aGUACAcGAUCUUUGCUUUCAUCGAgGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGUAGCUgC- -5'
8553 5' -43.5 NC_002169.1 + 52855 0.92 0.348648
Target:  5'- aGUACAUGAUCUUUGCUUUCGuccaagaucuUCGAUGa -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 104769 0.92 0.348648
Target:  5'- aUACAUGAUCUUUGCUUUCGUC-ACGa -3'
miRNA:   3'- cAUGUACUAGAAACGAAAGUAGcUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.