miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8553 5' -43.5 NC_002169.1 + 10520 0.92 0.375075
Target:  5'- -cACAacGAUCUUUGCUUUCAUCGACGa -3'
miRNA:   3'- caUGUa-CUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 10709 0.69 0.999948
Target:  5'- aGUACAcaAUgUUUGCUUUCAUCuACGa -3'
miRNA:   3'- -CAUGUacUAgAAACGAAAGUAGcUGC- -5'
8553 5' -43.5 NC_002169.1 + 10711 0.8 0.902249
Target:  5'- aGUACucGAUCUUUGCUUUCGuccaagaucuUCGACGa -3'
miRNA:   3'- -CAUGuaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 10819 0.83 0.75874
Target:  5'- aGUACAcGAUgUUUGCUUUCGUCGAgGa -3'
miRNA:   3'- -CAUGUaCUAgAAACGAAAGUAGCUgC- -5'
8553 5' -43.5 NC_002169.1 + 10900 1 0.139923
Target:  5'- aGUACAUGAUCUUUGCUUUCGUCGAa- -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 10939 0.86 0.625891
Target:  5'- gGUACAcGAUCUUUGCUUUCGuccaagaucuUCGACGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11008 1.12 0.030937
Target:  5'- aGUACAUGAUCUUUGCUUUCAUCGACGa -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11038 0.8 0.902249
Target:  5'- aGUACucGAUCUUUGCUUUCGuccaagaucuUCGACGa -3'
miRNA:   3'- -CAUGuaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11127 0.97 0.218476
Target:  5'- aUACAUGAUCUUUGCUUUCGUCGAa- -3'
miRNA:   3'- cAUGUACUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 11173 0.97 0.195863
Target:  5'- aUGCAcGAUCUUUGCUUUCGUCGACGa -3'
miRNA:   3'- cAUGUaCUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11228 1 0.139923
Target:  5'- aGUACAUGAUCUUUGCUUUCGUCGAa- -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 11286 0.88 0.525532
Target:  5'- aUACAcaAUCUUUGCUUUCAUCGACGa -3'
miRNA:   3'- cAUGUacUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11361 0.94 0.292275
Target:  5'- aUACAUGAUCUUUGCUUucguccaagaUCGUCGACGa -3'
miRNA:   3'- cAUGUACUAGAAACGAA----------AGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11444 0.88 0.558507
Target:  5'- aGUACAcGAUCUUUGCUUUCGUCcACGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGUAGcUGC- -5'
8553 5' -43.5 NC_002169.1 + 11475 0.9 0.431841
Target:  5'- aGUACAcGAUCUUUGCUUUCGUCGAa- -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 11572 0.95 0.256542
Target:  5'- aGUACucGAUCUUUGCUUUCAUCGACGa -3'
miRNA:   3'- -CAUGuaCUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11634 1.02 0.104918
Target:  5'- aGUACAUGAUgUUUGCUUUCAUCGACGa -3'
miRNA:   3'- -CAUGUACUAgAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11708 0.72 0.998908
Target:  5'- gGUugAUGAUCUUcauuugaggaUGaUUUCAUCGAUGa -3'
miRNA:   3'- -CAugUACUAGAA----------ACgAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11761 0.84 0.737391
Target:  5'- aUACAcGAUCUUUGCUUUCGUCcACGa -3'
miRNA:   3'- cAUGUaCUAGAAACGAAAGUAGcUGC- -5'
8553 5' -43.5 NC_002169.1 + 16143 0.66 1
Target:  5'- -gACAUG-UCUcacucCUUUCAUCGACa -3'
miRNA:   3'- caUGUACuAGAaac--GAAAGUAGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.