miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8553 5' -43.5 NC_002169.1 + 105207 0.84 0.726542
Target:  5'- aUACAcGAUCUUUGCUUuuguccaagaUCGUCGACGa -3'
miRNA:   3'- cAUGUaCUAGAAACGAA----------AGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 119603 0.9 0.431841
Target:  5'- aGUACAcGAUCUUUGCUUUCGUCGAa- -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 41873 0.9 0.441781
Target:  5'- aUACAcGAUCUUUGCUUUCAUCGAgGa -3'
miRNA:   3'- cAUGUaCUAGAAACGAAAGUAGCUgC- -5'
8553 5' -43.5 NC_002169.1 + 11286 0.88 0.525532
Target:  5'- aUACAcaAUCUUUGCUUUCAUCGACGa -3'
miRNA:   3'- cAUGUacUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11444 0.88 0.558507
Target:  5'- aGUACAcGAUCUUUGCUUUCGUCcACGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGUAGcUGC- -5'
8553 5' -43.5 NC_002169.1 + 120041 0.87 0.603301
Target:  5'- aGUACAcGAUCUUUGCUUUCGuccaagaucuUCGACGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 10939 0.86 0.625891
Target:  5'- gGUACAcGAUCUUUGCUUUCGuccaagaucuUCGACGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 42000 0.85 0.671054
Target:  5'- aGUACAcGAUCUUUGCUUUCAUCuauaaucuugGACGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGUAG----------CUGC- -5'
8553 5' -43.5 NC_002169.1 + 105412 0.85 0.704559
Target:  5'- aUACAcGAUCUUUGCUUUCAuccaagaucuUCGACGa -3'
miRNA:   3'- cAUGUaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 105095 0.91 0.393431
Target:  5'- aGUACAcGAUCUUUGCUUUCAUCGAa- -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 10520 0.92 0.375075
Target:  5'- -cACAacGAUCUUUGCUUUCAUCGACGa -3'
miRNA:   3'- caUGUa-CUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 104769 0.92 0.348648
Target:  5'- aUACAUGAUCUUUGCUUUCGUC-ACGa -3'
miRNA:   3'- cAUGUACUAGAAACGAAAGUAGcUGC- -5'
8553 5' -43.5 NC_002169.1 + 53044 1.12 0.030937
Target:  5'- aGUACAUGAUCUUUGCUUUCAUCGACGa -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 53124 1.11 0.034914
Target:  5'- aGUACAUGAUCUUUGCUUUCGUCGACGa -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 42190 1.04 0.09067
Target:  5'- aGUACAUGAUCUUUGCUUUCAUCGAgGa -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUgC- -5'
8553 5' -43.5 NC_002169.1 + 104837 1.01 0.124791
Target:  5'- aGUACAUGAUCUUUGCUUUCAUCGAa- -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 11173 0.97 0.195863
Target:  5'- aUGCAcGAUCUUUGCUUUCGUCGACGa -3'
miRNA:   3'- cAUGUaCUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11572 0.95 0.256542
Target:  5'- aGUACucGAUCUUUGCUUUCAUCGACGa -3'
miRNA:   3'- -CAUGuaCUAGAAACGAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 71638 0.94 0.299872
Target:  5'- aGUACAcGAUCUUUGCUUUCAUCGAgGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGUAGCUgC- -5'
8553 5' -43.5 NC_002169.1 + 104957 0.92 0.348648
Target:  5'- aGUACAUGAUCUUUGCUUUCGuccaagaucuUCGAUGa -3'
miRNA:   3'- -CAUGUACUAGAAACGAAAGU----------AGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.