Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8554 | 3' | -55.8 | NC_002169.1 | + | 123466 | 0.66 | 0.904153 |
Target: 5'- -cGAUGGuCGAGGGCGaguuugaaauGUAUCGAGucCGa -3' miRNA: 3'- caCUGCC-GCUCCUGU----------CGUAGCUCu-GC- -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 27144 | 0.66 | 0.897755 |
Target: 5'- uGUGAUGGCuGuAGGcgGGCGUCGggaAGACGg -3' miRNA: 3'- -CACUGCCG-C-UCCugUCGUAGC---UCUGC- -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 9057 | 0.66 | 0.884265 |
Target: 5'- -gGACGGCGGuGGGCAcggGCAUCGGcuGAa- -3' miRNA: 3'- caCUGCCGCU-CCUGU---CGUAGCU--CUgc -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 115969 | 0.67 | 0.862354 |
Target: 5'- -cGGCGGUGAGGG-AGUuuAUCGAggaGACGg -3' miRNA: 3'- caCUGCCGCUCCUgUCG--UAGCU---CUGC- -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 1559 | 0.67 | 0.862354 |
Target: 5'- gGUGGCGGCGGuGGCGGCGgcgCGuaAGAUu -3' miRNA: 3'- -CACUGCCGCUcCUGUCGUa--GC--UCUGc -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 107872 | 0.67 | 0.838561 |
Target: 5'- -cGACGGCGGuGGugGugGUGggCGAGACGa -3' miRNA: 3'- caCUGCCGCU-CCugU--CGUa-GCUCUGC- -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 134123 | 0.67 | 0.837737 |
Target: 5'- -aGGCGGCGAGGGCAccuuuucGCuuaccacccugGUCGAcguGACGc -3' miRNA: 3'- caCUGCCGCUCCUGU-------CG-----------UAGCU---CUGC- -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 19195 | 0.68 | 0.830242 |
Target: 5'- -cGACGGCGucGACGGCuAUCGcuaucGGGCc -3' miRNA: 3'- caCUGCCGCucCUGUCG-UAGC-----UCUGc -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 116970 | 0.68 | 0.830242 |
Target: 5'- uGUG-CGGgGAGGACGGCcUCGAa--- -3' miRNA: 3'- -CACuGCCgCUCCUGUCGuAGCUcugc -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 77843 | 0.68 | 0.813066 |
Target: 5'- -cGACGGCG-GGAuCGGCAcgcacguauUCGAGGuCGc -3' miRNA: 3'- caCUGCCGCuCCU-GUCGU---------AGCUCU-GC- -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 127946 | 0.68 | 0.786083 |
Target: 5'- -aGGCGGCGGcGGCGGCggCGGcGGCGu -3' miRNA: 3'- caCUGCCGCUcCUGUCGuaGCU-CUGC- -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 124918 | 0.69 | 0.776797 |
Target: 5'- -cGuccuCGGUGGGGGCGGCggCGGcGGCGg -3' miRNA: 3'- caCu---GCCGCUCCUGUCGuaGCU-CUGC- -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 121121 | 0.69 | 0.767381 |
Target: 5'- -gGugGGCauguuggucaAGGGCGGCGUCGAGcCGu -3' miRNA: 3'- caCugCCGc---------UCCUGUCGUAGCUCuGC- -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 72586 | 0.69 | 0.766432 |
Target: 5'- -aGugGGCGAugaaacuGGACGGgAuUCGAGGCa -3' miRNA: 3'- caCugCCGCU-------CCUGUCgU-AGCUCUGc -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 102735 | 0.69 | 0.757843 |
Target: 5'- -cGGCGGCGGcGGCGGCGaCGAGgACa -3' miRNA: 3'- caCUGCCGCUcCUGUCGUaGCUC-UGc -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 30483 | 0.69 | 0.748194 |
Target: 5'- -cGGCGGCaacguGAGcGGCGGCGUCGucGACa -3' miRNA: 3'- caCUGCCG-----CUC-CUGUCGUAGCu-CUGc -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 97088 | 0.69 | 0.745278 |
Target: 5'- uUGACGGCGAuGcggucgacgcugccGACGGUGUCGAcGACGc -3' miRNA: 3'- cACUGCCGCU-C--------------CUGUCGUAGCU-CUGC- -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 48292 | 0.7 | 0.728596 |
Target: 5'- -cGACGGCGccGACGGCGguuuguaUGAGACa -3' miRNA: 3'- caCUGCCGCucCUGUCGUa------GCUCUGc -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 125177 | 0.71 | 0.637303 |
Target: 5'- -cGGCGGUuGGGGCAGUAUCGGcGAgGg -3' miRNA: 3'- caCUGCCGcUCCUGUCGUAGCU-CUgC- -5' |
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8554 | 3' | -55.8 | NC_002169.1 | + | 74900 | 0.72 | 0.606488 |
Target: 5'- -cGAUGGCGAcGACGGCG--GAGACGa -3' miRNA: 3'- caCUGCCGCUcCUGUCGUagCUCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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