miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8557 3' -41.9 NC_002169.1 + 52662 1.1 0.0468
Target:  5'- uUUUAGUACACGAUGUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUGCUACAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10817 1.07 0.074218
Target:  5'- -cUAGUACACGAUGUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUACAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11636 1.04 0.113259
Target:  5'- -cUAGUACAUGAUGUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUCAUGUGCUACAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 105091 0.96 0.274708
Target:  5'- uUUUAGUACACGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10713 0.95 0.305531
Target:  5'- uUUUAGUACACaAUGUUUGCUUUCAUCu -3'
miRNA:   3'- -AAAUCAUGUGcUACAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 105400 0.95 0.31364
Target:  5'- cUUUAGUACACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11477 0.93 0.384306
Target:  5'- -aUAGUACACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 120037 0.93 0.384306
Target:  5'- uUUUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 119418 0.93 0.384306
Target:  5'- uUUUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 119796 0.92 0.423386
Target:  5'- cUUUGGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10935 0.92 0.423386
Target:  5'- cUUUGGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 104833 0.92 0.433522
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 42255 0.92 0.433522
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11012 0.92 0.433523
Target:  5'- gUUUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 119616 0.92 0.433523
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11442 0.91 0.475421
Target:  5'- -aUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10904 0.91 0.475422
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 42192 0.91 0.475422
Target:  5'- -aUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 119518 0.91 0.475422
Target:  5'- uUUUAGUACACGAUcUUUGCUUUUAUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 71637 0.91 0.48621
Target:  5'- --cAGUACACGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.