miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8557 3' -41.9 NC_002169.1 + 10520 0.68 0.999998
Target:  5'- -----cACaACGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucaUG-UGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10709 0.79 0.952657
Target:  5'- -cUAGUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10713 0.95 0.305531
Target:  5'- uUUUAGUACACaAUGUUUGCUUUCAUCu -3'
miRNA:   3'- -AAAUCAUGUGcUACAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10817 1.07 0.074218
Target:  5'- -cUAGUACACGAUGUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUACAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10904 0.91 0.475422
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10935 0.92 0.423386
Target:  5'- cUUUGGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11012 0.92 0.433523
Target:  5'- gUUUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11036 0.79 0.952657
Target:  5'- -cUAGUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11132 0.77 0.986743
Target:  5'- gUUUAaUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUcAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11173 0.79 0.957088
Target:  5'- ----aUGCACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11230 0.88 0.599235
Target:  5'- -cUAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11281 0.68 0.999999
Target:  5'- aUUUAaUACACaAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUcAUGUGcUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11366 0.74 0.99682
Target:  5'- uUUUAaUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUcAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11442 0.91 0.475421
Target:  5'- -aUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11477 0.93 0.384306
Target:  5'- -aUAGUACACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11570 0.82 0.867344
Target:  5'- -cUAGUACuCGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUCAUGuGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11636 1.04 0.113259
Target:  5'- -cUAGUACAUGAUGUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUCAUGUGCUACAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11761 0.77 0.984828
Target:  5'- ----aUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 41772 0.66 1
Target:  5'- ----aUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGuGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 41873 0.8 0.937562
Target:  5'- ----aUACACGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucAUGUGCUAcAAACGAAAGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.