miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8557 3' -41.9 NC_002169.1 + 41873 0.8 0.937562
Target:  5'- ----aUACACGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 42188 0.89 0.541748
Target:  5'- -gUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 53042 0.89 0.553123
Target:  5'- -cUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 105322 0.88 0.622519
Target:  5'- --aAGUACACaAUGUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGcUACAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 52784 0.88 0.634182
Target:  5'- --cGGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 105501 0.88 0.634182
Target:  5'- --cAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 53123 0.85 0.737548
Target:  5'- --cAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 104956 0.83 0.831262
Target:  5'- --cAGUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11570 0.82 0.867344
Target:  5'- -cUAGUACuCGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUCAUGuGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 41999 0.89 0.541748
Target:  5'- --cAGUACACGAUcUUUGCUUUCAUCu -3'
miRNA:   3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 119602 0.9 0.530451
Target:  5'- --cAGUACACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 71637 0.91 0.48621
Target:  5'- --cAGUACACGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10817 1.07 0.074218
Target:  5'- -cUAGUACACGAUGUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUACAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 105091 0.96 0.274708
Target:  5'- uUUUAGUACACGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 119418 0.93 0.384306
Target:  5'- uUUUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 120037 0.93 0.384306
Target:  5'- uUUUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10935 0.92 0.423386
Target:  5'- cUUUGGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 42255 0.92 0.433522
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 104833 0.92 0.433522
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11442 0.91 0.475421
Target:  5'- -aUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.