miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8557 5' -45.2 NC_002169.1 + 11198 0.98 0.117806
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11317 0.98 0.121252
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 119760 0.97 0.124791
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 53062 0.96 0.152358
Target:  5'- uUGGAUGAAAGCAAAGAUgAUGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAgUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 42417 0.95 0.170495
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 104995 0.95 0.170495
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 119454 0.95 0.170495
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 10851 0.95 0.170495
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 53202 0.95 0.170495
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 42348 0.94 0.185341
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 105253 0.94 0.190538
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 71795 0.93 0.206902
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 42158 0.93 0.212621
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 104925 0.93 0.212621
Target:  5'- -cGACGAAAGCAAAGAUCAUGUAUUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 120073 0.92 0.236869
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 105128 0.92 0.249839
Target:  5'- --uACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- accUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 105366 0.9 0.315522
Target:  5'- uUGGACaAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -ACCUGcUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 104989 0.9 0.315522
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUGCg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGau -5'
8557 5' -45.2 NC_002169.1 + 41930 0.89 0.348648
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCAUGau -5'
8557 5' -45.2 NC_002169.1 + 104867 0.89 0.357307
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCA--UGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.