Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8557 | 5' | -45.2 | NC_002169.1 | + | 52696 | 1.09 | 0.026588 |
Target: 5'- uUGGACGAAAGCAAAGAUCAUGUACUAg -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 71668 | 1.09 | 0.026588 |
Target: 5'- uUGGACGAAAGCAAAGAUCAUGUACUAg -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 53154 | 1.08 | 0.02912 |
Target: 5'- uUGGACGAAAGCAAAGAUCAUGUACUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 105117 | 1.08 | 0.02912 |
Target: 5'- uUGGACGAAAGCAAAGAUCAUGUACUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 119582 | 1.08 | 0.030015 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 120201 | 1.08 | 0.030015 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 11604 | 1.07 | 0.031888 |
Target: 5'- gUGGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 42030 | 1.07 | 0.031888 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 105662 | 1.07 | 0.034914 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACUGu -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 11202 | 1.04 | 0.053186 |
Target: 5'- uUGGACGAAAGCAAAGAUCAUGUAUUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 53074 | 1.03 | 0.058173 |
Target: 5'- uUGGACGAAAGCAAAGAUCAUGUAUUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 11602 | 1.02 | 0.063611 |
Target: 5'- gUGGACGAAAGCAAAGAUCGUGUAUUAu -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 11098 | 1.01 | 0.078272 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGau -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 52944 | 1.01 | 0.078272 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGau -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 119633 | 1.01 | 0.078272 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGau -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 11070 | 0.99 | 0.101909 |
Target: 5'- -cGACGAAAGCAAAGAUCAUGUACUAg -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 10743 | 0.99 | 0.101909 |
Target: 5'- -cGACGAAAGCAAAGAUCAUGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 105571 | 0.99 | 0.101909 |
Target: 5'- uUGGAUGAAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 53282 | 0.98 | 0.111187 |
Target: 5'- -cGACGAAAGCAAAGAUCAUGUACUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8557 | 5' | -45.2 | NC_002169.1 | + | 105238 | 0.98 | 0.114452 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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