miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8557 5' -45.2 NC_002169.1 + 52817 0.86 0.45185
Target:  5'- -cGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAgUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 10851 0.95 0.170495
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 119454 0.95 0.170495
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 120073 0.92 0.236869
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 105128 0.92 0.249839
Target:  5'- --uACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- accUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 104989 0.9 0.315522
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUGCg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGau -5'
8557 5' -45.2 NC_002169.1 + 104867 0.89 0.357307
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCA--UGAU- -5'
8557 5' -45.2 NC_002169.1 + 105534 0.88 0.375075
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 42289 0.88 0.393431
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACA---UGAu -5'
8557 5' -45.2 NC_002169.1 + 11317 0.98 0.121252
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 105238 0.98 0.114452
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11070 0.99 0.101909
Target:  5'- -cGACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 71668 1.09 0.026588
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 53154 1.08 0.02912
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 42030 1.07 0.031888
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11202 1.04 0.053186
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 53074 1.03 0.058173
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUAUUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11602 1.02 0.063611
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 119633 1.01 0.078272
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGau -5'
8557 5' -45.2 NC_002169.1 + 10743 0.99 0.101909
Target:  5'- -cGACGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.