miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8557 5' -45.2 NC_002169.1 + 1188 0.69 0.999038
Target:  5'- cGGGCGAGAGCGGAGuuuuacguuuuaAUCuuuccuuuaguucUGUACUAa -3'
miRNA:   3'- aCCUGCUUUCGUUUC------------UAGu------------ACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 10551 0.74 0.968814
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 10677 0.73 0.98019
Target:  5'- -cGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGU-ACAUgau -5'
8557 5' -45.2 NC_002169.1 + 10743 0.99 0.101909
Target:  5'- -cGACGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 10851 0.95 0.170495
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 10870 0.87 0.41236
Target:  5'- uUGGACG-AAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGUaCAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 10971 0.78 0.85538
Target:  5'- -cGACGAAA-CAAAGAUCAUGUAUUAa -3'
miRNA:   3'- acCUGCUUUcGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 10976 0.84 0.558507
Target:  5'- -cGACGAAAGCAAAcAUCGUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11070 0.99 0.101909
Target:  5'- -cGACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11098 1.01 0.078272
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGau -5'
8557 5' -45.2 NC_002169.1 + 11198 0.98 0.117806
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11202 1.04 0.053186
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11317 0.98 0.121252
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11330 0.79 0.828519
Target:  5'- -cGACGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACau---GAU- -5'
8557 5' -45.2 NC_002169.1 + 11443 0.83 0.637201
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11476 0.81 0.715594
Target:  5'- -cGAUGAAAGCAAAcAUCAUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11602 1.02 0.063611
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11604 1.07 0.031888
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11730 0.84 0.580814
Target:  5'- -cGAUGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUaCAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 29549 0.66 0.999962
Target:  5'- gUGGACGAGAaCGAGGAcgaGUGUaaaACUAa -3'
miRNA:   3'- -ACCUGCUUUcGUUUCUag-UACA---UGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.