miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8559 5' -47.6 NC_002169.1 + 60652 1.13 0.009651
Target:  5'- uGUGCAACGAUUGCACCGUAAACACGCu -3'
miRNA:   3'- -CACGUUGCUAACGUGGCAUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 35336 0.75 0.890618
Target:  5'- -cGCAACGuGUUGCAgCGUAGACgauucguuccgcucaGCGCu -3'
miRNA:   3'- caCGUUGC-UAACGUgGCAUUUG---------------UGCG- -5'
8559 5' -47.6 NC_002169.1 + 29120 0.74 0.920951
Target:  5'- -aGCGugGAgcgUGCGCuCGUAAGUGCGCu -3'
miRNA:   3'- caCGUugCUa--ACGUG-GCAUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 134816 0.73 0.926786
Target:  5'- -gGCGACGAcuuugUGCACCagcuUAGGCACGUc -3'
miRNA:   3'- caCGUUGCUa----ACGUGGc---AUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 13614 0.73 0.937635
Target:  5'- -gGCAGCGGUaUGCugUG-AAACACGUc -3'
miRNA:   3'- caCGUUGCUA-ACGugGCaUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 80405 0.73 0.939674
Target:  5'- -gGCGACGAUggguuucgugagcgGCAUCGUGAGCauugauGCGCu -3'
miRNA:   3'- caCGUUGCUAa-------------CGUGGCAUUUG------UGCG- -5'
8559 5' -47.6 NC_002169.1 + 123376 0.72 0.967211
Target:  5'- uUGCAAUGGcgGCgACgGUAAACAgGCa -3'
miRNA:   3'- cACGUUGCUaaCG-UGgCAUUUGUgCG- -5'
8559 5' -47.6 NC_002169.1 + 39261 0.71 0.973413
Target:  5'- -gGCGuCGGUgagUGCACCGUcGACgACGCc -3'
miRNA:   3'- caCGUuGCUA---ACGUGGCAuUUG-UGCG- -5'
8559 5' -47.6 NC_002169.1 + 36717 0.71 0.978717
Target:  5'- cUGCAugGcGUUGgAUCGcGAACGCGCc -3'
miRNA:   3'- cACGUugC-UAACgUGGCaUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 74710 0.71 0.981055
Target:  5'- -cGCGACaGGUgggGCA-CGUAAugGCGCg -3'
miRNA:   3'- caCGUUG-CUAa--CGUgGCAUUugUGCG- -5'
8559 5' -47.6 NC_002169.1 + 35332 0.7 0.983194
Target:  5'- -gGCGGCGGUgGCACUuaguuGUAuuGCGCGCu -3'
miRNA:   3'- caCGUUGCUAaCGUGG-----CAUu-UGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 125466 0.7 0.985146
Target:  5'- --aCGGCGGcUGCAgCGUAAACugGUg -3'
miRNA:   3'- cacGUUGCUaACGUgGCAUUUGugCG- -5'
8559 5' -47.6 NC_002169.1 + 100680 0.7 0.986921
Target:  5'- uUGCGGCGAc-GCGCCGUuAGUACGUu -3'
miRNA:   3'- cACGUUGCUaaCGUGGCAuUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 29478 0.7 0.986921
Target:  5'- aGUGCGACGAUaugauaaugUGUGUCGUAAACGCcCg -3'
miRNA:   3'- -CACGUUGCUA---------ACGUGGCAUUUGUGcG- -5'
8559 5' -47.6 NC_002169.1 + 18115 0.69 0.989976
Target:  5'- aUGCccCGAUUGcCGCUGUGcAugACGCg -3'
miRNA:   3'- cACGuuGCUAAC-GUGGCAU-UugUGCG- -5'
8559 5' -47.6 NC_002169.1 + 52065 0.69 0.989976
Target:  5'- cGUGCGAUucg-GUGCCGggcuuGACGCGCa -3'
miRNA:   3'- -CACGUUGcuaaCGUGGCau---UUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 78094 0.69 0.991278
Target:  5'- -aGCAuCGAUcGCACC--AAAUACGCg -3'
miRNA:   3'- caCGUuGCUAaCGUGGcaUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 111959 0.69 0.991278
Target:  5'- -gGUGACcacuUUGCugaaaucuGCCGUGAACACGCc -3'
miRNA:   3'- caCGUUGcu--AACG--------UGGCAUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 77982 0.69 0.991278
Target:  5'- cGUGCGACGGUaaaaCGCCGg--GCAUGUa -3'
miRNA:   3'- -CACGUUGCUAac--GUGGCauuUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 7958 0.69 0.992442
Target:  5'- -aGCAAUccacGCACCGUGGACAUagGCa -3'
miRNA:   3'- caCGUUGcuaaCGUGGCAUUUGUG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.