Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8559 | 5' | -47.6 | NC_002169.1 | + | 109001 | 0.66 | 0.999506 |
Target: 5'- gGUGCGcaucaccaacgacACGA-UGCGCCa-AGACAUGCu -3' miRNA: 3'- -CACGU-------------UGCUaACGUGGcaUUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 111680 | 0.69 | 0.994399 |
Target: 5'- -cGCuGGCGAUg--GCCGUGAACGCGg -3' miRNA: 3'- caCG-UUGCUAacgUGGCAUUUGUGCg -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 47215 | 0.67 | 0.998283 |
Target: 5'- cGUGCAGCcGUUGCucgugucGCCGaauucguGCACGUg -3' miRNA: 3'- -CACGUUGcUAACG-------UGGCauu----UGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 47158 | 0.67 | 0.998611 |
Target: 5'- -gGCGGCGuugggaGCGCCGUGAuuGCGg -3' miRNA: 3'- caCGUUGCuaa---CGUGGCAUUugUGCg -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 24371 | 0.67 | 0.999053 |
Target: 5'- gGUGUAcacguugGCGAUcGCGCCGUcGAuCACGg -3' miRNA: 3'- -CACGU-------UGCUAaCGUGGCAuUU-GUGCg -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 44589 | 0.67 | 0.999072 |
Target: 5'- aUGCAACGcaccgUGC-CCGaacUGGAgGCGCa -3' miRNA: 3'- cACGUUGCua---ACGuGGC---AUUUgUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 34508 | 0.66 | 0.999249 |
Target: 5'- uUGCGGCGGcgGCGCCGU-----CGCc -3' miRNA: 3'- cACGUUGCUaaCGUGGCAuuuguGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 18018 | 0.66 | 0.999396 |
Target: 5'- -cGuCAACGAUuuggGCGCCGcAAACACc- -3' miRNA: 3'- caC-GUUGCUAa---CGUGGCaUUUGUGcg -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 526 | 0.66 | 0.999396 |
Target: 5'- -gGCGGCGGUUGCcCCGU---CAUGa -3' miRNA: 3'- caCGUUGCUAACGuGGCAuuuGUGCg -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 7958 | 0.69 | 0.992442 |
Target: 5'- -aGCAAUccacGCACCGUGGACAUagGCa -3' miRNA: 3'- caCGUUGcuaaCGUGGCAUUUGUG--CG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 111959 | 0.69 | 0.991278 |
Target: 5'- -gGUGACcacuUUGCugaaaucuGCCGUGAACACGCc -3' miRNA: 3'- caCGUUGcu--AACG--------UGGCAUUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 18115 | 0.69 | 0.989976 |
Target: 5'- aUGCccCGAUUGcCGCUGUGcAugACGCg -3' miRNA: 3'- cACGuuGCUAAC-GUGGCAU-UugUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 35336 | 0.75 | 0.890618 |
Target: 5'- -cGCAACGuGUUGCAgCGUAGACgauucguuccgcucaGCGCu -3' miRNA: 3'- caCGUUGC-UAACGUgGCAUUUG---------------UGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 29120 | 0.74 | 0.920951 |
Target: 5'- -aGCGugGAgcgUGCGCuCGUAAGUGCGCu -3' miRNA: 3'- caCGUugCUa--ACGUG-GCAUUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 134816 | 0.73 | 0.926786 |
Target: 5'- -gGCGACGAcuuugUGCACCagcuUAGGCACGUc -3' miRNA: 3'- caCGUUGCUa----ACGUGGc---AUUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 123376 | 0.72 | 0.967211 |
Target: 5'- uUGCAAUGGcgGCgACgGUAAACAgGCa -3' miRNA: 3'- cACGUUGCUaaCG-UGgCAUUUGUgCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 39261 | 0.71 | 0.973413 |
Target: 5'- -gGCGuCGGUgagUGCACCGUcGACgACGCc -3' miRNA: 3'- caCGUuGCUA---ACGUGGCAuUUG-UGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 36717 | 0.71 | 0.978717 |
Target: 5'- cUGCAugGcGUUGgAUCGcGAACGCGCc -3' miRNA: 3'- cACGUugC-UAACgUGGCaUUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 29478 | 0.7 | 0.986921 |
Target: 5'- aGUGCGACGAUaugauaaugUGUGUCGUAAACGCcCg -3' miRNA: 3'- -CACGUUGCUA---------ACGUGGCAUUUGUGcG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 52065 | 0.69 | 0.989976 |
Target: 5'- cGUGCGAUucg-GUGCCGggcuuGACGCGCa -3' miRNA: 3'- -CACGUUGcuaaCGUGGCau---UUGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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