miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8559 5' -47.6 NC_002169.1 + 526 0.66 0.999396
Target:  5'- -gGCGGCGGUUGCcCCGU---CAUGa -3'
miRNA:   3'- caCGUUGCUAACGuGGCAuuuGUGCg -5'
8559 5' -47.6 NC_002169.1 + 1197 0.66 0.999517
Target:  5'- -aGCAGCG---GCACCG-AGGCACa- -3'
miRNA:   3'- caCGUUGCuaaCGUGGCaUUUGUGcg -5'
8559 5' -47.6 NC_002169.1 + 7958 0.69 0.992442
Target:  5'- -aGCAAUccacGCACCGUGGACAUagGCa -3'
miRNA:   3'- caCGUUGcuaaCGUGGCAUUUGUG--CG- -5'
8559 5' -47.6 NC_002169.1 + 13614 0.73 0.937635
Target:  5'- -gGCAGCGGUaUGCugUG-AAACACGUc -3'
miRNA:   3'- caCGUUGCUA-ACGugGCaUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 18018 0.66 0.999396
Target:  5'- -cGuCAACGAUuuggGCGCCGcAAACACc- -3'
miRNA:   3'- caC-GUUGCUAa---CGUGGCaUUUGUGcg -5'
8559 5' -47.6 NC_002169.1 + 18115 0.69 0.989976
Target:  5'- aUGCccCGAUUGcCGCUGUGcAugACGCg -3'
miRNA:   3'- cACGuuGCUAAC-GUGGCAU-UugUGCG- -5'
8559 5' -47.6 NC_002169.1 + 21855 0.67 0.999013
Target:  5'- uUGCAAUGccucaaaaugccagGCACCGUuuuuAGCGCGUc -3'
miRNA:   3'- cACGUUGCuaa-----------CGUGGCAu---UUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 24371 0.67 0.999053
Target:  5'- gGUGUAcacguugGCGAUcGCGCCGUcGAuCACGg -3'
miRNA:   3'- -CACGU-------UGCUAaCGUGGCAuUU-GUGCg -5'
8559 5' -47.6 NC_002169.1 + 29120 0.74 0.920951
Target:  5'- -aGCGugGAgcgUGCGCuCGUAAGUGCGCu -3'
miRNA:   3'- caCGUugCUa--ACGUG-GCAUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 29478 0.7 0.986921
Target:  5'- aGUGCGACGAUaugauaaugUGUGUCGUAAACGCcCg -3'
miRNA:   3'- -CACGUUGCUA---------ACGUGGCAUUUGUGcG- -5'
8559 5' -47.6 NC_002169.1 + 34508 0.66 0.999249
Target:  5'- uUGCGGCGGcgGCGCCGU-----CGCc -3'
miRNA:   3'- cACGUUGCUaaCGUGGCAuuuguGCG- -5'
8559 5' -47.6 NC_002169.1 + 35332 0.7 0.983194
Target:  5'- -gGCGGCGGUgGCACUuaguuGUAuuGCGCGCu -3'
miRNA:   3'- caCGUUGCUAaCGUGG-----CAUu-UGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 35336 0.75 0.890618
Target:  5'- -cGCAACGuGUUGCAgCGUAGACgauucguuccgcucaGCGCu -3'
miRNA:   3'- caCGUUGC-UAACGUgGCAUUUG---------------UGCG- -5'
8559 5' -47.6 NC_002169.1 + 36717 0.71 0.978717
Target:  5'- cUGCAugGcGUUGgAUCGcGAACGCGCc -3'
miRNA:   3'- cACGUugC-UAACgUGGCaUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 39261 0.71 0.973413
Target:  5'- -gGCGuCGGUgagUGCACCGUcGACgACGCc -3'
miRNA:   3'- caCGUuGCUA---ACGUGGCAuUUG-UGCG- -5'
8559 5' -47.6 NC_002169.1 + 42525 0.68 0.997563
Target:  5'- -aGCGacgGCGAUagcauacaaUGCACCaucAACACGCa -3'
miRNA:   3'- caCGU---UGCUA---------ACGUGGcauUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 42983 0.66 0.999396
Target:  5'- uGUGgaCAGCGAUcgcgGCGCCGccuuuGACuACGCa -3'
miRNA:   3'- -CAC--GUUGCUAa---CGUGGCau---UUG-UGCG- -5'
8559 5' -47.6 NC_002169.1 + 44589 0.67 0.999072
Target:  5'- aUGCAACGcaccgUGC-CCGaacUGGAgGCGCa -3'
miRNA:   3'- cACGUUGCua---ACGuGGC---AUUUgUGCG- -5'
8559 5' -47.6 NC_002169.1 + 45817 0.67 0.999053
Target:  5'- -gGCGAUuucaccaGAUUGCucGCCGacucGACACGCg -3'
miRNA:   3'- caCGUUG-------CUAACG--UGGCau--UUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 46090 0.67 0.998861
Target:  5'- -gGCGGCGGcgGUGCCG--GACgACGCa -3'
miRNA:   3'- caCGUUGCUaaCGUGGCauUUG-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.