Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8566 | 5' | -48.5 | NC_002169.1 | + | 99351 | 1.11 | 0.01162 |
Target: 5'- aCGAAUACGACACAACCACUACCGACGa -3' miRNA: 3'- -GCUUAUGCUGUGUUGGUGAUGGCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 112060 | 0.81 | 0.56887 |
Target: 5'- cCGGAUG-GACGCGGCCcgaauuGCUGCCGACGa -3' miRNA: 3'- -GCUUAUgCUGUGUUGG------UGAUGGCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 99378 | 0.8 | 0.654172 |
Target: 5'- aCGAcgACGACACuACCACcacagaUACCGACa -3' miRNA: 3'- -GCUuaUGCUGUGuUGGUG------AUGGCUGc -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 97087 | 0.78 | 0.738168 |
Target: 5'- uGAcgGCGAUGCGGucgaCGCUGCCGACGg -3' miRNA: 3'- gCUuaUGCUGUGUUg---GUGAUGGCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 65278 | 0.75 | 0.858575 |
Target: 5'- gCGAAUACGACgACGACgACga-CGACGa -3' miRNA: 3'- -GCUUAUGCUG-UGUUGgUGaugGCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 77793 | 0.74 | 0.902608 |
Target: 5'- uCGAGUGCGaauuGCGCAACgACUGcgccaaccgucCCGACGg -3' miRNA: 3'- -GCUUAUGC----UGUGUUGgUGAU-----------GGCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 110174 | 0.74 | 0.915291 |
Target: 5'- uGAcGUugGACACGAUCAC-GCCGGCc -3' miRNA: 3'- gCU-UAugCUGUGUUGGUGaUGGCUGc -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 9886 | 0.74 | 0.915898 |
Target: 5'- uGAGUACG-UACGGCCGCgaucucuuuaucgaaACCGACGa -3' miRNA: 3'- gCUUAUGCuGUGUUGGUGa--------------UGGCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 36002 | 0.73 | 0.926936 |
Target: 5'- uCGAA-ACGACGC--CCGCUGCCGuCGg -3' miRNA: 3'- -GCUUaUGCUGUGuuGGUGAUGGCuGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 53839 | 0.73 | 0.932367 |
Target: 5'- uGAAUACGACACAaucuaaucauugGCCGgUcgauccgaauccGCCGGCGu -3' miRNA: 3'- gCUUAUGCUGUGU------------UGGUgA------------UGGCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 93687 | 0.73 | 0.937536 |
Target: 5'- ----gGCGAC-CuuuGCCGCUACCGGCa -3' miRNA: 3'- gcuuaUGCUGuGu--UGGUGAUGGCUGc -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 129801 | 0.72 | 0.955639 |
Target: 5'- ----aGCGACGCGACCACaaUGgCGACa -3' miRNA: 3'- gcuuaUGCUGUGUUGGUG--AUgGCUGc -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 52273 | 0.71 | 0.963192 |
Target: 5'- uCGAugcGCGGCguACAGCagACUACCGACGc -3' miRNA: 3'- -GCUua-UGCUG--UGUUGg-UGAUGGCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 120338 | 0.71 | 0.963192 |
Target: 5'- ----aACGACACGACgACUAC-GACGa -3' miRNA: 3'- gcuuaUGCUGUGUUGgUGAUGgCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 12051 | 0.71 | 0.963192 |
Target: 5'- --cAUACGACACAugucaCACUcgaaGCCGGCGa -3' miRNA: 3'- gcuUAUGCUGUGUug---GUGA----UGGCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 35018 | 0.71 | 0.96661 |
Target: 5'- uCGAGUACGGcCACAuccCCGCgcUCGACGc -3' miRNA: 3'- -GCUUAUGCU-GUGUu--GGUGauGGCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 78447 | 0.71 | 0.96661 |
Target: 5'- -aGAUGCaAUACGAUCGCUugCGGCGa -3' miRNA: 3'- gcUUAUGcUGUGUUGGUGAugGCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 72798 | 0.71 | 0.969798 |
Target: 5'- uCGAGUACGAgUACGAagaCGCUAUCGAUc -3' miRNA: 3'- -GCUUAUGCU-GUGUUg--GUGAUGGCUGc -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 30321 | 0.71 | 0.975511 |
Target: 5'- ----gACGACGCcGCCGCUcacguugccgccGCCGAUGg -3' miRNA: 3'- gcuuaUGCUGUGuUGGUGA------------UGGCUGC- -5' |
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8566 | 5' | -48.5 | NC_002169.1 | + | 47381 | 0.71 | 0.975511 |
Target: 5'- aCGAAUucgGCGACACGagcaACgGCUgcacgucgGCCGGCGa -3' miRNA: 3'- -GCUUA---UGCUGUGU----UGgUGA--------UGGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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