miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8566 5' -48.5 NC_002169.1 + 1076 0.7 0.98254
Target:  5'- uCGAcgGCGACGCG-CCGCUGCaaGAUa -3'
miRNA:   3'- -GCUuaUGCUGUGUuGGUGAUGg-CUGc -5'
8566 5' -48.5 NC_002169.1 + 2836 0.66 0.998944
Target:  5'- gGAcgACGAUACGACUACcauuuugauugguggGCCGuCGg -3'
miRNA:   3'- gCUuaUGCUGUGUUGGUGa--------------UGGCuGC- -5'
8566 5' -48.5 NC_002169.1 + 4445 0.68 0.996782
Target:  5'- aCGAcgACGACgACGACgGCgg-CGACGg -3'
miRNA:   3'- -GCUuaUGCUG-UGUUGgUGaugGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 4688 0.67 0.998415
Target:  5'- aCGAcgACGACgACGA-CGCUAauaaCGACGa -3'
miRNA:   3'- -GCUuaUGCUG-UGUUgGUGAUg---GCUGC- -5'
8566 5' -48.5 NC_002169.1 + 9886 0.74 0.915898
Target:  5'- uGAGUACG-UACGGCCGCgaucucuuuaucgaaACCGACGa -3'
miRNA:   3'- gCUUAUGCuGUGUUGGUGa--------------UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 12051 0.71 0.963192
Target:  5'- --cAUACGACACAugucaCACUcgaaGCCGGCGa -3'
miRNA:   3'- gcuUAUGCUGUGUug---GUGA----UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 15817 0.67 0.99869
Target:  5'- ----gACGACAgcgucgucgUGACCGCcGCCGACGc -3'
miRNA:   3'- gcuuaUGCUGU---------GUUGGUGaUGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 24710 0.67 0.997283
Target:  5'- aCGAAUuaACGACgACGACgACga-CGACGa -3'
miRNA:   3'- -GCUUA--UGCUG-UGUUGgUGaugGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 26191 0.66 0.99912
Target:  5'- aGAugGCaGCGCAACgACgucGCCGGCGa -3'
miRNA:   3'- gCUuaUGcUGUGUUGgUGa--UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 30321 0.71 0.975511
Target:  5'- ----gACGACGCcGCCGCUcacguugccgccGCCGAUGg -3'
miRNA:   3'- gcuuaUGCUGUGuUGGUGA------------UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 30785 0.66 0.999285
Target:  5'- aCGAGUuuGCGAgACGAgCACauUGCCGAa- -3'
miRNA:   3'- -GCUUA--UGCUgUGUUgGUG--AUGGCUgc -5'
8566 5' -48.5 NC_002169.1 + 32457 0.67 0.997718
Target:  5'- gGAAUcacGCGugAUAugCAauugGCCGGCGa -3'
miRNA:   3'- gCUUA---UGCugUGUugGUga--UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 33115 0.66 0.998923
Target:  5'- uGAcgACGACgACGACgACga-CGACGa -3'
miRNA:   3'- gCUuaUGCUG-UGUUGgUGaugGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 35018 0.71 0.96661
Target:  5'- uCGAGUACGGcCACAuccCCGCgcUCGACGc -3'
miRNA:   3'- -GCUUAUGCU-GUGUu--GGUGauGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 35532 0.69 0.990736
Target:  5'- aCGAAUACGACAaguuugucauCAACggacaaauguUACUGCgCGGCGg -3'
miRNA:   3'- -GCUUAUGCUGU----------GUUG----------GUGAUG-GCUGC- -5'
8566 5' -48.5 NC_002169.1 + 36002 0.73 0.926936
Target:  5'- uCGAA-ACGACGC--CCGCUGCCGuCGg -3'
miRNA:   3'- -GCUUaUGCUGUGuuGGUGAUGGCuGC- -5'
8566 5' -48.5 NC_002169.1 + 36931 0.66 0.998923
Target:  5'- --cGUGCGAgGuCGGCUACgugGCCGACu -3'
miRNA:   3'- gcuUAUGCUgU-GUUGGUGa--UGGCUGc -5'
8566 5' -48.5 NC_002169.1 + 37202 0.66 0.999422
Target:  5'- cCGAGaACGACACuuuuGCaACUGCCccgucGACGa -3'
miRNA:   3'- -GCUUaUGCUGUGu---UGgUGAUGG-----CUGC- -5'
8566 5' -48.5 NC_002169.1 + 37755 0.66 0.999422
Target:  5'- aGAGUGUGGCAuCAGCCccaaguCUACCGcaGCGg -3'
miRNA:   3'- gCUUAUGCUGU-GUUGGu-----GAUGGC--UGC- -5'
8566 5' -48.5 NC_002169.1 + 37870 0.68 0.996782
Target:  5'- uCGGcauCGACACcACCGCcgaguaUGCCGACa -3'
miRNA:   3'- -GCUuauGCUGUGuUGGUG------AUGGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.