miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8566 5' -48.5 NC_002169.1 + 24710 0.67 0.997283
Target:  5'- aCGAAUuaACGACgACGACgACga-CGACGa -3'
miRNA:   3'- -GCUUA--UGCUG-UGUUGgUGaugGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 1076 0.7 0.98254
Target:  5'- uCGAcgGCGACGCG-CCGCUGCaaGAUa -3'
miRNA:   3'- -GCUuaUGCUGUGUuGGUGAUGg-CUGc -5'
8566 5' -48.5 NC_002169.1 + 35532 0.69 0.990736
Target:  5'- aCGAAUACGACAaguuugucauCAACggacaaauguUACUGCgCGGCGg -3'
miRNA:   3'- -GCUUAUGCUGU----------GUUG----------GUGAUG-GCUGC- -5'
8566 5' -48.5 NC_002169.1 + 42733 0.69 0.991931
Target:  5'- gCGAGUACGuacuACGCAA-CACcACCGACc -3'
miRNA:   3'- -GCUUAUGC----UGUGUUgGUGaUGGCUGc -5'
8566 5' -48.5 NC_002169.1 + 129098 0.69 0.993001
Target:  5'- gCGAGUcCGugAUAGCCGCU-CgGACa -3'
miRNA:   3'- -GCUUAuGCugUGUUGGUGAuGgCUGc -5'
8566 5' -48.5 NC_002169.1 + 39933 0.68 0.994801
Target:  5'- ----gGCGGCACucuacgaCGCUGCCGACc -3'
miRNA:   3'- gcuuaUGCUGUGuug----GUGAUGGCUGc -5'
8566 5' -48.5 NC_002169.1 + 62268 0.68 0.994801
Target:  5'- aGAGUACGAuUGCAugCcgaGCUauaccGCCGACGa -3'
miRNA:   3'- gCUUAUGCU-GUGUugG---UGA-----UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 61426 0.68 0.995549
Target:  5'- aCGAcgACGACgACGACgAUUA-CGACGg -3'
miRNA:   3'- -GCUuaUGCUG-UGUUGgUGAUgGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 37870 0.68 0.996782
Target:  5'- uCGGcauCGACACcACCGCcgaguaUGCCGACa -3'
miRNA:   3'- -GCUuauGCUGUGuUGGUG------AUGGCUGc -5'
8566 5' -48.5 NC_002169.1 + 57160 0.7 0.977806
Target:  5'- aGAGUAUGAucacgaaCACGACCACgcagcACaCGACGa -3'
miRNA:   3'- gCUUAUGCU-------GUGUUGGUGa----UG-GCUGC- -5'
8566 5' -48.5 NC_002169.1 + 30321 0.71 0.975511
Target:  5'- ----gACGACGCcGCCGCUcacguugccgccGCCGAUGg -3'
miRNA:   3'- gcuuaUGCUGUGuUGGUGA------------UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 78447 0.71 0.96661
Target:  5'- -aGAUGCaAUACGAUCGCUugCGGCGa -3'
miRNA:   3'- gcUUAUGcUGUGUUGGUGAugGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 112060 0.81 0.56887
Target:  5'- cCGGAUG-GACGCGGCCcgaauuGCUGCCGACGa -3'
miRNA:   3'- -GCUUAUgCUGUGUUGG------UGAUGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 99378 0.8 0.654172
Target:  5'- aCGAcgACGACACuACCACcacagaUACCGACa -3'
miRNA:   3'- -GCUuaUGCUGUGuUGGUG------AUGGCUGc -5'
8566 5' -48.5 NC_002169.1 + 65278 0.75 0.858575
Target:  5'- gCGAAUACGACgACGACgACga-CGACGa -3'
miRNA:   3'- -GCUUAUGCUG-UGUUGgUGaugGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 9886 0.74 0.915898
Target:  5'- uGAGUACG-UACGGCCGCgaucucuuuaucgaaACCGACGa -3'
miRNA:   3'- gCUUAUGCuGUGUUGGUGa--------------UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 93687 0.73 0.937536
Target:  5'- ----gGCGAC-CuuuGCCGCUACCGGCa -3'
miRNA:   3'- gcuuaUGCUGuGu--UGGUGAUGGCUGc -5'
8566 5' -48.5 NC_002169.1 + 129801 0.72 0.955639
Target:  5'- ----aGCGACGCGACCACaaUGgCGACa -3'
miRNA:   3'- gcuuaUGCUGUGUUGGUG--AUgGCUGc -5'
8566 5' -48.5 NC_002169.1 + 12051 0.71 0.963192
Target:  5'- --cAUACGACACAugucaCACUcgaaGCCGGCGa -3'
miRNA:   3'- gcuUAUGCUGUGUug---GUGA----UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 52273 0.71 0.963192
Target:  5'- uCGAugcGCGGCguACAGCagACUACCGACGc -3'
miRNA:   3'- -GCUua-UGCUG--UGUUGg-UGAUGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.