miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8568 3' -44.4 NC_002169.1 + 53120 1.1 0.025872
Target:  5'- aUUCAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUCAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 53318 1.08 0.034079
Target:  5'- aUUCAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 104953 1.08 0.036225
Target:  5'- cUUCAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 10904 1.05 0.052167
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUCAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11230 1.02 0.081854
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUCAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 119599 1 0.097788
Target:  5'- uUUCAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 52860 1 0.106816
Target:  5'- aUUCuAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAG-UCAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 71832 1 0.106816
Target:  5'- aUUCuAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAG-UCAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 52782 0.97 0.155665
Target:  5'- aUCGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 104764 0.96 0.160163
Target:  5'- uUUCAaUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- -AAGUcAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 105400 0.95 0.189684
Target:  5'- cUUUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 105287 0.95 0.195046
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaGUCAUGUACUAGAAACGAAAGCAg -5'
8568 3' -44.4 NC_002169.1 + 53238 0.94 0.20617
Target:  5'- uUUCAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUcAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 105500 0.94 0.217839
Target:  5'- -aCAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 120037 0.93 0.236396
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 119418 0.93 0.236396
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11477 0.92 0.263179
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 104833 0.92 0.270249
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUCAUGUACUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 11012 0.92 0.270249
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUCAUGUACUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 42255 0.92 0.270249
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUCAUGUACUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.