miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8568 3' -44.4 NC_002169.1 + 10324 0.68 0.999796
Target:  5'- aUC-GUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aAGuCAUGUACU--------AGAAACGaaAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 10709 0.83 0.664534
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGuaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 10817 0.83 0.68723
Target:  5'- -cUAGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUCAUGUaCUAgAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 10904 1.05 0.052167
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUCAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 10935 0.9 0.340809
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11012 0.92 0.270249
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUCAUGUACUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 11036 0.83 0.664534
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGuaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11132 0.91 0.292375
Target:  5'- gUUUAaUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUcAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11167 0.83 0.664534
Target:  5'- -gCAGaaaUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUC---AUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11230 1.02 0.081854
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUCAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11366 0.89 0.367117
Target:  5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUcAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11442 0.9 0.332348
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11477 0.92 0.263179
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11570 0.72 0.992215
Target:  5'- -cUAGUACucGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaGUCAUGuaCUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 11639 0.79 0.834027
Target:  5'- aUUCuAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AAG-UCAUGUACUAgAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 11761 0.78 0.900032
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aagucAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 41768 0.72 0.993321
Target:  5'- cUCcaUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAGucAUGuaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 41869 0.72 0.995156
Target:  5'- uUUCA-UACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUcAUGUaCUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 41996 0.86 0.506814
Target:  5'- gUUCAGUACAcGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 42065 0.87 0.485349
Target:  5'- aUUUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGuaCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.