miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8568 3' -44.4 NC_002169.1 + 105091 0.82 0.698498
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 42188 0.89 0.385416
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaGUCAUGUACUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 53039 0.89 0.394789
Target:  5'- aUUCuAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAG-UCAUGUACUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 71634 0.87 0.453996
Target:  5'- uUUCAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 41996 0.86 0.506814
Target:  5'- gUUCAGUACAcGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 10709 0.83 0.664534
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGuaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11036 0.83 0.664534
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGuaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11167 0.83 0.664534
Target:  5'- -gCAGaaaUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUC---AUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 10817 0.83 0.68723
Target:  5'- -cUAGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUCAUGUaCUAgAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 10935 0.9 0.340809
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11442 0.9 0.332348
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 104833 0.92 0.270249
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUCAUGUACUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 104953 1.08 0.036225
Target:  5'- cUUCAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 119599 1 0.097788
Target:  5'- uUUCAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 52782 0.97 0.155665
Target:  5'- aUCGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 104764 0.96 0.160163
Target:  5'- uUUCAaUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- -AAGUcAUGUACUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 105500 0.94 0.217839
Target:  5'- -aCAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 119418 0.93 0.236396
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 120037 0.93 0.236396
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 42255 0.92 0.270249
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUCAUGUACUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.