Results 1 - 20 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 42378 | 0.69 | 1 |
Target: 5'- -----aACACaAUCUUUGCUUUcGUCc -3' miRNA: 3'- aaauuaUGUGcUAGAAACGAAAaCAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 71829 | 0.91 | 0.673862 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUcGUCc -3' miRNA: 3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 11366 | 0.94 | 0.543847 |
Target: 5'- uUUUAAUACAUGAUCUUUGCUUUcGUCc -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 105400 | 1.01 | 0.287135 |
Target: 5'- cUUUAGUACACGAUCUUUGCUUUcGUCg -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 52978 | 0.74 | 0.999924 |
Target: 5'- uUUUAGUACACcAUCUUUGCUUUcaUCg -3' miRNA: 3'- -AAAUUAUGUGcUAGAAACGAAAacAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 29673 | 0.74 | 0.999924 |
Target: 5'- -----aACGCGAUCggUUGCcUUUUGUCu -3' miRNA: 3'- aaauuaUGUGCUAGa-AACG-AAAACAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 105601 | 0.76 | 0.999478 |
Target: 5'- ---cAUACACaAUCUUUGCUUUcGUCg -3' miRNA: 3'- aaauUAUGUGcUAGAAACGAAAaCAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 11563 | 0.76 | 0.999336 |
Target: 5'- cUUGA-ACACcAUCUUUGUUUUUGUCa -3' miRNA: 3'- aAAUUaUGUGcUAGAAACGAAAACAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 105287 | 0.86 | 0.890332 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUcGUa -3' miRNA: 3'- aaAUUAUGUGCUAGAAACGAAAaCAg -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 52857 | 0.91 | 0.673862 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUcGUCc -3' miRNA: 3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 42065 | 0.87 | 0.856583 |
Target: 5'- aUUUAGUACuCGAUCUUUGCUUUcGUCc -3' miRNA: 3'- -AAAUUAUGuGCUAGAAACGAAAaCAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 119616 | 0.85 | 0.919191 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUcaUCg -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAacAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 42447 | 0.69 | 1 |
Target: 5'- -----aACACaAUCUUUGCUUUcGUCc -3' miRNA: 3'- aaauuaUGUGcUAGAAACGAAAaCAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 53235 | 0.88 | 0.808323 |
Target: 5'- --cAAUACAUGAUCUUUGCUUUcGUCc -3' miRNA: 3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 105145 | 0.71 | 1 |
Target: 5'- -----cACAUGAUCUUUGCUUUcaUCg -3' miRNA: 3'- aaauuaUGUGCUAGAAACGAAAacAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 11012 | 0.85 | 0.919191 |
Target: 5'- gUUUAGUACAUGAUCUUUGCUUUcaUCg -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAacAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 53315 | 0.88 | 0.808323 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUcGUCc -3' miRNA: 3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 11230 | 0.93 | 0.567164 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUcGUCg -3' miRNA: 3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 11636 | 0.72 | 0.999999 |
Target: 5'- -cUAGUACAUGAUgUUUGCUUUcaUCg -3' miRNA: 3'- aaAUUAUGUGCUAgAAACGAAAacAG- -5' |
|||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 105026 | 0.75 | 0.999861 |
Target: 5'- ----cUACuCGAUCUUUGCUUUcGUCc -3' miRNA: 3'- aaauuAUGuGCUAGAAACGAAAaCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home