miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8569 5' -45.8 NC_002169.1 + 105115 0.89 0.341582
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 104997 0.93 0.215219
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 104987 0.88 0.385047
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUGCg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGau -5'
8569 5' -45.8 NC_002169.1 + 104927 0.91 0.265642
Target:  5'- gUCGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 104869 0.82 0.667464
Target:  5'- -gGACGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCaCA--UGAU- -5'
8569 5' -45.8 NC_002169.1 + 104799 0.73 0.97783
Target:  5'- -gGACGAAAGCAAAGAUUG---ACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCacaUGAU- -5'
8569 5' -45.8 NC_002169.1 + 99937 0.68 0.999397
Target:  5'- aUUGACGcGAGGCGGcgcAGGUCGUgGUAUUGa -3'
miRNA:   3'- -AGCUGC-UUUCGUU---UCUAGCA-CAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 97066 0.66 0.999968
Target:  5'- aUCGACGAuc-CGAAcGUUGUGUACa- -3'
miRNA:   3'- -AGCUGCUuucGUUUcUAGCACAUGau -5'
8569 5' -45.8 NC_002169.1 + 71797 1.04 0.047547
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 71670 0.89 0.317255
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 70186 0.66 0.999956
Target:  5'- gUCGACGAGGGCAAcaaGUCG-GUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUuc-UAGCaCAUgau -5'
8569 5' -45.8 NC_002169.1 + 53494 0.7 0.99582
Target:  5'- aUCGACGggGGUguGGAGAUCGUa----- -3'
miRNA:   3'- -AGCUGCuuUCG--UUUCUAGCAcaugau -5'
8569 5' -45.8 NC_002169.1 + 53284 0.96 0.142642
Target:  5'- gUCGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 53204 0.93 0.215219
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 53156 0.89 0.341582
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 53076 0.84 0.567612
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 53060 0.78 0.832549
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAgcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 52942 0.95 0.163936
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGau -5'
8569 5' -45.8 NC_002169.1 + 52932 0.81 0.732944
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCaCAUGau -5'
8569 5' -45.8 NC_002169.1 + 52825 0.92 0.245692
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGCACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.