miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 3' -45.7 NC_002169.1 + 105034 0.8 0.741673
Target:  5'- gCAuCAGccUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -GU-GUC--AUGuGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 119323 0.82 0.687539
Target:  5'- uCAUAG---ACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -GUGUCaugUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 105207 0.83 0.598644
Target:  5'- ----aUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11361 0.84 0.565515
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 53236 0.85 0.532882
Target:  5'- -uCAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUcAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 53042 0.85 0.522151
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 119614 0.85 0.511504
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 11010 0.85 0.511504
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 42188 0.85 0.511504
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 104835 0.85 0.511504
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 42257 0.85 0.511504
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 119516 0.85 0.500948
Target:  5'- -uUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 11127 0.86 0.469885
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 104766 0.87 0.439835
Target:  5'- -uCAaUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- guGUcAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 10709 0.89 0.339846
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGuGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11036 0.89 0.339846
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGuGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 105093 0.89 0.339846
Target:  5'- -uUAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 42063 0.89 0.331615
Target:  5'- -uUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGuGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 120230 0.9 0.307806
Target:  5'- ----aUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 41998 0.9 0.300165
Target:  5'- -uCAGUACACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.