Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8570 | 3' | -45.7 | NC_002169.1 | + | 71636 | 0.91 | 0.26416 |
Target: 5'- -uCAGUACACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 105287 | 0.91 | 0.278124 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGCAg -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 11766 | 0.91 | 0.285325 |
Target: 5'- aUAUAaUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -GUGUcAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 41998 | 0.9 | 0.300165 |
Target: 5'- -uCAGUACACGAUCUUUGCUUUCaUCu -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 120230 | 0.9 | 0.307806 |
Target: 5'- ----aUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- gugucAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 42063 | 0.89 | 0.331615 |
Target: 5'- -uUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- guGUCAUGuGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 11036 | 0.89 | 0.339846 |
Target: 5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- guGUCAUGuGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 10709 | 0.89 | 0.339846 |
Target: 5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- guGUCAUGuGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 105093 | 0.89 | 0.339846 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 104766 | 0.87 | 0.439835 |
Target: 5'- -uCAaUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- guGUcAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 11127 | 0.86 | 0.469885 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- gugucAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 119516 | 0.85 | 0.500948 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUUaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 42257 | 0.85 | 0.511504 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 104835 | 0.85 | 0.511504 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 119614 | 0.85 | 0.511504 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 11010 | 0.85 | 0.511504 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 42188 | 0.85 | 0.511504 |
Target: 5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 53042 | 0.85 | 0.522151 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 53236 | 0.85 | 0.532882 |
Target: 5'- -uCAaUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- guGUcAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 11361 | 0.84 | 0.565515 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- gugucAUGUGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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