miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 3' -45.7 NC_002169.1 + 105498 1.1 0.023087
Target:  5'- uCACAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -GUGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11478 1.05 0.044468
Target:  5'- aAUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gUGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 119601 1.04 0.053092
Target:  5'- -uCAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 42194 1.03 0.05468
Target:  5'- uUAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -GUGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11441 1.03 0.057995
Target:  5'- aAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gUGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 105398 1.01 0.071196
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 52783 1 0.08477
Target:  5'- -uCGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 53122 1 0.08982
Target:  5'- -uCAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 119420 1 0.092451
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 120039 1 0.092451
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 104955 0.98 0.116278
Target:  5'- -uCAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 53316 0.98 0.116278
Target:  5'- -uCAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11166 0.98 0.116278
Target:  5'- uGCAGaaaUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gUGUC---AUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 10938 0.98 0.119632
Target:  5'- --uGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gugUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 10902 0.98 0.119632
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 119793 0.98 0.119632
Target:  5'- --uGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gugUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11230 0.97 0.123075
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 52857 0.95 0.158442
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 71829 0.95 0.158442
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 10817 0.92 0.231739
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- guGUCAUGUGCUAgAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.