Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8570 | 3' | -45.7 | NC_002169.1 | + | 53042 | 0.85 | 0.522151 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 41998 | 0.9 | 0.300165 |
Target: 5'- -uCAGUACACGAUCUUUGCUUUCaUCu -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 10709 | 0.89 | 0.339846 |
Target: 5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- guGUCAUGuGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 11036 | 0.89 | 0.339846 |
Target: 5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- guGUCAUGuGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 105093 | 0.89 | 0.339846 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 104766 | 0.87 | 0.439835 |
Target: 5'- -uCAaUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- guGUcAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 42188 | 0.85 | 0.511504 |
Target: 5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 42257 | 0.85 | 0.511504 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 104835 | 0.85 | 0.511504 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 71636 | 0.91 | 0.26416 |
Target: 5'- -uCAGUACACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 10817 | 0.92 | 0.231739 |
Target: 5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3' miRNA: 3'- guGUCAUGUGCUAgAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 10938 | 0.98 | 0.119632 |
Target: 5'- --uGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- gugUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 119601 | 1.04 | 0.053092 |
Target: 5'- -uCAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 11441 | 1.03 | 0.057995 |
Target: 5'- aAUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- gUGUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 52783 | 1 | 0.08477 |
Target: 5'- -uCGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 53122 | 1 | 0.08982 |
Target: 5'- -uCAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 119420 | 1 | 0.092451 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 120039 | 1 | 0.092451 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 11166 | 0.98 | 0.116278 |
Target: 5'- uGCAGaaaUGCACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- gUGUC---AUGUGCUAGAAACGAAAGCAG- -5' |
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8570 | 3' | -45.7 | NC_002169.1 | + | 104955 | 0.98 | 0.116278 |
Target: 5'- -uCAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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