miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 3' -45.7 NC_002169.1 + 10519 0.7 0.996381
Target:  5'- cCACA----ACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -GUGUcaugUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 10709 0.89 0.339846
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGuGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 10711 0.67 0.999857
Target:  5'- -uUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- guGUCAUGUGcUAgAAACGAA----------AGCAG- -5'
8570 3' -45.7 NC_002169.1 + 10817 0.92 0.231739
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- guGUCAUGUGCUAgAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 10902 0.98 0.119632
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 10938 0.98 0.119632
Target:  5'- --uGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gugUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11010 0.85 0.511504
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 11036 0.89 0.339846
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGuGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11127 0.86 0.469885
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11166 0.98 0.116278
Target:  5'- uGCAGaaaUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gUGUC---AUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11230 0.97 0.123075
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11361 0.84 0.565515
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11441 1.03 0.057995
Target:  5'- aAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gUGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11478 1.05 0.044468
Target:  5'- aAUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gUGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11570 0.78 0.830988
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGuGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 11571 0.66 0.999939
Target:  5'- uGCGGaaacuugaACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- gUGUCa-------UGUGcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11636 0.76 0.922478
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAgAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 11766 0.91 0.285325
Target:  5'- aUAUAaUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -GUGUcAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 31415 0.68 0.999379
Target:  5'- gGC-GUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- gUGuCAUGUGCUAGAa-----ACgAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 41766 0.78 0.865584
Target:  5'- uGCuccaUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gUGuc--AUGuGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.