miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 3' -45.7 NC_002169.1 + 120230 0.9 0.307806
Target:  5'- ----aUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 120039 1 0.092451
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 119793 0.98 0.119632
Target:  5'- --uGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gugUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 119614 0.85 0.511504
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 119601 1.04 0.053092
Target:  5'- -uCAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 119516 0.85 0.500948
Target:  5'- -uUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 119420 1 0.092451
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 119323 0.82 0.687539
Target:  5'- uCAUAG---ACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -GUGUCaugUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 108377 0.68 0.999608
Target:  5'- aACuGUGC-CGAUU--UGUUUUCGUCg -3'
miRNA:   3'- gUGuCAUGuGCUAGaaACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 105690 0.76 0.916331
Target:  5'- ----aUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 105600 0.77 0.888948
Target:  5'- ----aUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gugucAUGUGcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 105498 1.1 0.023087
Target:  5'- uCACAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -GUGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 105401 0.76 0.922478
Target:  5'- aCGCAacuuuaaUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -GUGUc------AUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 105398 1.01 0.071196
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 105322 0.76 0.922478
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- gugUCAUGUGcUAgAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 105287 0.91 0.278124
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAg -5'
8570 3' -45.7 NC_002169.1 + 105207 0.83 0.598644
Target:  5'- ----aUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 105145 0.71 0.993125
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- gugucaUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 105093 0.89 0.339846
Target:  5'- -uUAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 105034 0.8 0.741673
Target:  5'- gCAuCAGccUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -GU-GUC--AUGuGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.