miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 3' -45.7 NC_002169.1 + 41873 0.77 0.873631
Target:  5'- ----aUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 41998 0.9 0.300165
Target:  5'- -uCAGUACACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 42063 0.89 0.331615
Target:  5'- -uUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGuGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 42188 0.85 0.511504
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 42194 1.03 0.05468
Target:  5'- uUAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -GUGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 42257 0.85 0.511504
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 42378 0.73 0.982195
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gugucaUGUGcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 42453 0.75 0.944237
Target:  5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gugUCA---UGUGcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 52664 0.8 0.762615
Target:  5'- -uUAGUACACGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAgAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 52783 1 0.08477
Target:  5'- -uCGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 52857 0.95 0.158442
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 52900 0.71 0.993125
Target:  5'- -uUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- guGUCAUGUGcUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 52976 0.76 0.916331
Target:  5'- -uUAGUACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGcUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 53042 0.85 0.522151
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 53122 1 0.08982
Target:  5'- -uCAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 53236 0.85 0.532882
Target:  5'- -uCAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUcAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 53316 0.98 0.116278
Target:  5'- -uCAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 71636 0.91 0.26416
Target:  5'- -uCAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 71829 0.95 0.158442
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 104766 0.87 0.439835
Target:  5'- -uCAaUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- guGUcAUGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.