miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 3' -45.7 NC_002169.1 + 11571 0.66 0.999939
Target:  5'- uGCGGaaacuugaACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- gUGUCa-------UGUGcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11127 0.86 0.469885
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 120230 0.9 0.307806
Target:  5'- ----aUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11478 1.05 0.044468
Target:  5'- aAUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gUGUCAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 42378 0.73 0.982195
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gugucaUGUGcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 104958 0.73 0.971803
Target:  5'- uCAUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- -GUGUCAuGUgcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11636 0.76 0.922478
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAgAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 105690 0.76 0.916331
Target:  5'- ----aUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 105034 0.8 0.741673
Target:  5'- gCAuCAGccUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -GU-GUC--AUGuGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 119516 0.85 0.500948
Target:  5'- -uUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 11010 0.85 0.511504
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 105600 0.77 0.888948
Target:  5'- ----aUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gugucAUGUGcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 10711 0.67 0.999857
Target:  5'- -uUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- guGUCAUGUGcUAgAAACGAA----------AGCAG- -5'
8570 3' -45.7 NC_002169.1 + 53236 0.85 0.532882
Target:  5'- -uCAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUcAUGUGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 108377 0.68 0.999608
Target:  5'- aACuGUGC-CGAUU--UGUUUUCGUCg -3'
miRNA:   3'- gUGuCAUGuGCUAGaaACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 52976 0.76 0.916331
Target:  5'- -uUAGUACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGcUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 119614 0.85 0.511504
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 42063 0.89 0.331615
Target:  5'- -uUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- guGUCAUGuGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 105145 0.71 0.993125
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- gugucaUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 42453 0.75 0.944237
Target:  5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gugUCA---UGUGcUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.