miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 5' -42.1 NC_002169.1 + 105532 1.09 0.058303
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 42031 1.05 0.100152
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 11445 1.05 0.100152
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 105255 1.02 0.14242
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 105569 1.02 0.14242
Target:  5'- -gGAUGAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- agCUACUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 71797 1.02 0.146599
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 120071 0.99 0.206101
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 42158 0.95 0.333323
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 10679 0.93 0.396359
Target:  5'- gUCGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGC-ACAUaau -5'
8570 5' -42.1 NC_002169.1 + 52815 0.93 0.405971
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 119762 0.92 0.445838
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 105236 0.92 0.445838
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11315 0.92 0.445838
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11604 0.91 0.466574
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 11732 0.91 0.486726
Target:  5'- gUCGAUGAAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGC-------------ACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 105441 0.9 0.531527
Target:  5'- uUCGAcGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 104997 0.89 0.599462
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 53204 0.89 0.599462
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 119452 0.89 0.599462
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 10849 0.89 0.599462
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.