miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 5' -42.1 NC_002169.1 + 42291 0.75 0.996382
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAuaau -5'
8570 5' -42.1 NC_002169.1 + 42032 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 119635 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 10741 0.78 0.970261
Target:  5'- uUCGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11068 0.78 0.970261
Target:  5'- uUCGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11204 0.78 0.970261
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 53076 0.78 0.978961
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 10551 0.75 0.995698
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUcUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 42222 0.75 0.996382
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAuaau -5'
8570 5' -42.1 NC_002169.1 + 119354 0.87 0.656978
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUAcUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 104987 0.88 0.633966
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUGc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 52932 0.88 0.633966
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCaCAUAau -5'
8570 5' -42.1 NC_002169.1 + 120071 0.99 0.206101
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 52815 0.93 0.405971
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11315 0.92 0.445838
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 105236 0.92 0.445838
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11604 0.91 0.466574
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 105441 0.9 0.531527
Target:  5'- uUCGAcGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 10849 0.89 0.599462
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 119452 0.89 0.599462
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.