miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 5' -42.1 NC_002169.1 + 11315 0.92 0.445838
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 105236 0.92 0.445838
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11604 0.91 0.466574
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 105441 0.9 0.531527
Target:  5'- uUCGAcGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 10849 0.89 0.599462
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 119635 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 42032 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 119354 0.87 0.656978
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUAcUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 104987 0.88 0.633966
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUGc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 52932 0.88 0.633966
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCaCAUAau -5'
8570 5' -42.1 NC_002169.1 + 119452 0.89 0.599462
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 41928 0.75 0.995698
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUAau -5'
8570 5' -42.1 NC_002169.1 + 118888 0.74 0.99792
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccGUGa-- -3'
miRNA:   3'- -AGCUACUUUCGuu--UCUAGCa--CAUaau -5'
8570 5' -42.1 NC_002169.1 + 53060 0.73 0.999269
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUCUAgcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 119482 0.73 0.999269
Target:  5'- -gGAcGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCAcAUAau -5'
8570 5' -42.1 NC_002169.1 + 11196 0.72 0.999721
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUaau -5'
8570 5' -42.1 NC_002169.1 + 105115 0.71 0.999949
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 10880 0.67 1
Target:  5'- gUCGAaGAucuuggacgAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -AGCUaCU---------UUCGUUUCUAGC-------------ACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 129825 0.66 1
Target:  5'- uUCGAcUGAAcgaacGCGacGAGAUCGUGUGc-- -3'
miRNA:   3'- -AGCU-ACUUu----CGU--UUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 42031 1.05 0.100152
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.