miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 5' -42.1 NC_002169.1 + 42031 1.05 0.100152
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 42032 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 42158 0.95 0.333323
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 42222 0.75 0.996382
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAuaau -5'
8570 5' -42.1 NC_002169.1 + 42291 0.75 0.996382
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAuaau -5'
8570 5' -42.1 NC_002169.1 + 42350 0.88 0.610947
Target:  5'- cUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 42419 0.89 0.599462
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 48879 0.68 0.999999
Target:  5'- -aGAUGAGGGa--GGAUUGUGUGUc- -3'
miRNA:   3'- agCUACUUUCguuUCUAGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 52698 0.71 0.999949
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 52815 0.93 0.405971
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 52825 0.87 0.656978
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 52932 0.88 0.633966
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCaCAUAau -5'
8570 5' -42.1 NC_002169.1 + 52942 0.84 0.809558
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 53060 0.73 0.999269
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUCUAgcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 53076 0.78 0.978961
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 53156 0.71 0.999949
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 53204 0.89 0.599462
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 53284 0.78 0.970261
Target:  5'- gUCGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 71670 0.71 0.999949
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 71797 1.02 0.146599
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.